Performance of distributed multiscale simulations

Author:

Borgdorff J.1,Ben Belgacem M.2,Bona-Casas C.3,Fazendeiro L.4,Groen D.5,Hoenen O.6,Mizeranschi A.7,Suter J. L.5,Coster D.6,Coveney P. V.5,Dubitzky W.7,Hoekstra A. G.18,Strand P.4,Chopard B.2

Affiliation:

1. Computational Science, Informatics Institute, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands

2. Computer Science Department, University of Geneva, 1227 Carouge, Switzerland

3. Department of Applied Mathematics, University of A Coruña, 15001 A Coruña, Spain

4. Department of Earth and Space Sciences, Chalmers University of Technology, 41296 Göteborg, Sweden

5. Centre for Computational Science, University College London, 20 Gordon Street, London WC1H OAJ, UK

6. Max-Planck-Institut für Plasmaphysik, 85748 Garching, Germany

7. Nano Systems Biology, School of Biomedicine, University of Ulster, Coleraine BTS2 1SA, UK

8. National Research University ITMO, Kronverkskiy prospekt 49, 197101 St Petersburg, Russia

Abstract

Multiscale simulations model phenomena across natural scales using monolithic or component-based code, running on local or distributed resources. In this work, we investigate the performance of distributed multiscale computing of component-based models, guided by six multiscale applications with different characteristics and from several disciplines. Three modes of distributed multiscale computing are identified: supplementing local dependencies with large-scale resources, load distribution over multiple resources, and load balancing of small- and large-scale resources. We find that the first mode has the apparent benefit of increasing simulation speed, and the second mode can increase simulation speed if local resources are limited. Depending on resource reservation and model coupling topology, the third mode may result in a reduction of resource consumption.

Publisher

The Royal Society

Subject

General Physics and Astronomy,General Engineering,General Mathematics

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