Core Imaging Library - Part II: multichannel reconstruction for dynamic and spectral tomography

Author:

Papoutsellis Evangelos12ORCID,Ametova Evelina13ORCID,Delplancke Claire4ORCID,Fardell Gemma2ORCID,Jørgensen Jakob S.56ORCID,Pasca Edoardo2ORCID,Turner Martin7ORCID,Warr Ryan1ORCID,Lionheart William R. B.5ORCID,Withers Philip J.1ORCID

Affiliation:

1. Henry Royce Institute, Department of Materials, The University of Manchester, Manchester, UK

2. Scientific Computing Department, Science Technology Facilities Council, UK Research and Innovation, Rutherford Appleton Laboratory, Didcot, UK

3. Laboratory for Applications of Synchrotron Radiation, Karlsruhe Institute of Technology, Karlsruhe, Germany

4. Department of Mathematical Sciences, University of Bath, Bath, UK

5. Department of Mathematics, The University of Manchester, Manchester, UK

6. Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kongens Lyngby, Denmark

7. Research IT Services, The University of Manchester, Manchester, UK

Abstract

The newly developed core imaging library (CIL) is a flexible plug and play library for tomographic imaging with a specific focus on iterative reconstruction. CIL provides building blocks for tailored regularized reconstruction algorithms and explicitly supports multichannel tomographic data. In the first part of this two-part publication, we introduced the fundamentals of CIL. This paper focuses on applications of CIL for multichannel data, e.g. dynamic and spectral. We formalize different optimization problems for colour processing, dynamic and hyperspectral tomography and demonstrate CIL’s capabilities for designing state-of-the-art reconstruction methods through case studies and code snapshots. This article is part of the theme issue ‘Synergistic tomographic image reconstruction: part 2’.

Funder

PET++: Improving Localisation, Diagnosis and Quantification in Clinical and Medical PET Imaging with Randomised Optimisation

Henry Royce Institute

The Villum Foundation

ERC CORREL-CT

Henry Moseley X-ray Imaging Facility

Royal Society Wolfson Research Merit Award

A Reconstruction Toolkit for Multichannel CT

Collaborative Computational Project in Tomographic Imaging

Publisher

The Royal Society

Subject

General Physics and Astronomy,General Engineering,General Mathematics

Reference59 articles.

1. EPSRC X-Ray Tomography Roadmap. 2018 See https://epsrc.ukri.org/files/research/epsrc-x-ray-tomography-roadmap-2018/.

2. Relative properties of tomography, K -edge imaging, and K -edge tomography

3. Strain imaging by Bragg edge neutron transmission

4. Jørgensen JS et al. 2021 Core Imaging Library part I: a versatile Python framework for tomographic imaging. Phil. Trans. R. Soc. A 379 20200192. (doi:10.1098/rsta.2020.0192)

5. Ametova E Fardell G Jørgensen JS Papoutsellis E Pasca E. 2021 Releases of Core Imaging Library (CIL). Zenodo . (doi:10.5281/zenodo.4746198)

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