Characterization of POR haplotype distribution in African populations and comparison with other global populations

Author:

Booyse Ross P1ORCID,Twesigomwe David12ORCID,Hazelhurst Scott23ORCID

Affiliation:

1. Division of Human Genetics, National Health Laboratory Service and School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa

2. Sydney Brenner Institute for Molecular Bioscience, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa

3. School of Electrical and Information Engineering, University of the Witwatersrand, Johannesburg, South Africa

Abstract

Background & aim: POR is an enzyme that mediates electron transfer to enable the drug-metabolizing activity of CYP450 proteins. However, POR has been understudied in pharmacogenomics despite this vital role. This study aimed to characterize the genetic variation in POR across African populations and to compare the star allele (haplotype) distribution with that in other global populations. Materials & methods: POR star alleles were called from whole-genome sequencing data using the StellarPGx pipeline. Results: In addition to the common POR*1 and *28 (defined by rs1057868), five novel rare haplotypes were computationally inferred. No significant frequency differences were observed among the majority of African populations. However, POR*28 was observed at a higher frequency in individuals of non-African ancestry. Conclusion: This study highlights the distribution of POR alleles in Africa and across global populations with a view toward informing future precision medicine implementation.

Funder

GlaxoSmithKline Research and Development Ltd.

National Research Foundation of South Africa

University of the Witwatersrand Post Graduate Merit Award

the Africa-Wits INDEPTH Partnership for Genomics Research (AWI-Gen) Collaborative Center which is funded by the NIH/NHGRI

Publisher

Future Medicine Ltd

Subject

Pharmacology,Genetics,Molecular Medicine

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