Identification of tissue of origin in cancer of unknown primary using a targeted bisulfite sequencing panel

Abstract

Aim: To construct a targeted bisulfite sequencing panel predicting origin of cancer of unknown primary. Methods: A bisulfite sequencing panel targeting 2793 tissue-specific markers was performed in 100 clinical samples. Results: The authors' prediction model showed 0.85 accuracy for the ‘first-ranked’ tissue type and 0.93 accuracy for the ‘second-ranked’ tissue type using 2793 tissue-specific markers and 0.84 accuracy for the ‘first-ranked’ tissue type and 0.92 accuracy for the ‘second-ranked’ tissue type when the number of tissue-specific markers was reduced to 514. Conclusion: Targeted bisulfite sequencing is a useful method for predicting the tissue of origin in patients with cancer of unknown primary.