1. Adachi, J., Hasegawa, M. (1992) MOLPHY: Programs for Molecular Phylogenetics 1 � PROTML: Maximum Likelihood Inference of Protein Phylogeny. Computer Science Monographs, No. 27. Institute of Statistical Mathematics, Tokyo.
2. Adachi, J., Hasegawa, M. (1996). Model of amino acid substitution in proteins encoded by mitochondrial DNA. Journal of Molecular Evolution 42: 459�468. DOI: 10.1007/BF02498640
3. Adachi, J., Waddell, P.J., Martin, W., Hasegawa, M. (2000). Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. Journal of Molecular Evolution 50: 348�358.
4. Akaike, H. (1974) A new look at the statistical model identification. IEEE Transactions on Automatic Control 19: 716�723. DOI: 10.1109/TAC.1974.1100705
5. Albert, V. (ed.) (2006). Parsimony, Phylogeny, and Genomics. Oxford University Press, Oxford.