SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan-Reference-Cited by-同舟云学术

SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan

Published:2023-10-01 Issue:5 Volume:98 Page:221-237
ISSN:1341-7568
Container-title:Genes & Genetic Systems
language:en
Short-container-title:Genes Genet. Syst.

Author:

Nakagawa So¹,Katayama Toshiaki²,Jin Lihua³,Wu Jiaqi¹,Kryukov Kirill⁴,Oyachi Rise¹,Takeuchi Junko S⁵,Fujisawa Takatomo⁴,Asano Satomi⁶,Komatsu Momoka⁷,Onami Jun-ichi⁸,Abe Takashi⁴,Arita Masanori⁶

Affiliation:

1. Department of Molecular Life Science, Tokai University School of Medicine

2. Database Center for Life Science

3. Genomus Co., Ltd.

4. Bioinformation and DDBJ Center, National Institute of Genetics

5. Center for Clinical Sciences, National Center for Global Health and Medicine

6. Department of Informatics, National Institute of Genetics

7. Smart Information Systems, Faculty of Engineering, Niigata University

8. Research Center for Open Science and Data Platform, National Institute of Informatics

Publisher

Genetics Society of Japan

Subject

Genetics,Molecular Biology,General Medicine

Link

https://www.jstage.jst.go.jp/article/ggs/98/5/98_23-00085/_pdf

Reference53 articles.

1. Abe, T., and Arita, M. (2021) Genomic surveillance in Japan of AY.29—a new sub-lineage of SARS-CoV-2 Delta variant with C5239T and T5514C mutations. medRxiv, doi: https://doi.org/10.1101/2021.09.20.21263869

2. Arima, Y., Kanou, K., Arashiro, T., Ko, Y. K., Otani, K., Tsuchihashi, Y., Takahashi, T., Miyahara, R., Sunagawa, T., and Suzuki, M. (2021) Epidemiology of coronavirus disease 2019 in Japan: descriptive findings and lessons learned through surveillance during the first three waves. JMA J. 4, 198–206.

3. Arima, Y., Shimada, T., Suzuki, M., Suzuki, T., Kobayashi, Y., Tsuchihashi, Y., Nakamura, H., Matsumoto, K., Takeda, A., Kadokura, K., et al. (2020) Severe acute respiratory syndrome coronavirus 2 infection among returnees to Japan from Wuhan, China, 2020. Emerg. Infect. Dis. 26, 1596–600.

4. Arita, M. (2021) Open access and data sharing of nucleotide sequence data. Data Sci. J. 20, 28.

5. Carabelli, A. M., Peacock, T. P., Thorne, L. G., Harvey, W. T., Hughes, J., COVID-19 Genomics UK Consortium, Peacock, S. J., Barclay, W. S., de Silva, T. I., Towers, G. J., et al. (2023) SARS-CoV-2 variant biology: immune escape, transmission and fitness. Nat. Rev. 21, 162–177.