Protein-protein interaction prediction by combined analysis of genomic and conservation information-Reference-Cited by-同舟云学术

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Protein-protein interaction prediction by combined analysis of genomic and conservation information

Published:2014 Issue:6 Volume:89 Page:259-272
ISSN:1341-7568
Container-title:Genes & Genetic Systems
language:en
Short-container-title:Genes Genet. Syst.

Author:

Emamjomeh Abbasali¹,Goliaei Bahram¹,Torkamani Ali²,Ebrahimpour Reza³,Mohammadi Nima⁴,Parsian Ahmad⁴

Affiliation:

1. Institute of Biochemistry and Biophysics, University of Tehran

2. The Scripps Translational Science Institute, The Scripps Research Institute

3. Department of Computer Engineering, Shahid Rajaee Teacher Training University

4. School of Mathematics, Statistics, and Computer Science, University of Tehran

Publisher

Genetics Society of Japan

Subject

Genetics,Molecular Biology,General Medicine

Reference70 articles.

1. Aloy, P., and Russell, R. B. (2003) InterPreTS: protein interaction prediction through tertiary structure. Bioinformatics 19, 161–162.

2. Aloy, P., Bottcher, B., Ceulemans, H., Leutwein, C., Mellwig, C., Fischer, S., Gavin, A.-C., Bork, P., Superti-Furga, G., Serrano, L., and Russell, R. B. (2004) Structure-based assembly of protein complexes in yeast. Science 303, 2026–2029.

3. Alvarez, M. J., Sumazin, P., Rajbhandari, P., and Califano, A. (2009) Correlating measurements across samples improves accuracy of large-scale expression profile experiments. Genome Biol. 10, R143.

4. Ben-Hur, A., and Noble, W. S. (2005) Kernel methods for predicting protein-protein interactions. Bioinformatics 21(suppl 1), i38–i46.

5. Chen, J., Hsu, W., Lee, M. L., and Ng, S.-K. (2006) Increasing confidence of protein interactomes using network topological metrics. Bioinformatics 22, 1998–2004.

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