Multiple copy number variation in a patient with Kleefstra syndrome

Author:

Lee Thomas Nohama1ORCID,Rechetello Henrique El Laden1ORCID,Lima Júnior João Batista De Arêa1ORCID,Cornelio João Pedro Fagoti Ferraz2ORCID,Pegoraro Naiara Bozza1ORCID,Raskin Salmo3ORCID,Mikami Liya Regina4ORCID

Affiliation:

1. Faculdade Evangélica Mackenzie do Paraná, Brazil

2. Universidade Positivo, Brazil

3. Centro de Aconselhamento e Laboratório de Genética, Brazil

4. Faculdade Evangélica Mackenzie do Paraná, Brazil; Centro de Aconselhamento e Laboratório de Genética, Brazil

Abstract

ABSTRACT Objective: To report a rare case of a patient with a molecular diagnosis of Kleefstra syndrome (KS) who has four other chromosomal alterations involving pathogenic variants. Case description: Male patient, two years old, with global delay, including in neuropsychomotor development, ocular hypertelorism, broad forehead, brachycephaly, hypotonia, ligament laxity, unilateral single palmar crease and arachnoid cyst. The microarray-based comparative genomic hybridization (a-CGH) identified copy number variations (CNVs) in five regions: 9q34.3, 6p22.1, Yq11.223, Yp11.23, and 2q24.1. The heterozygous microdeletion in 9q34.3 involving the EHMT1 gene confirms the diagnosis of KS. Comments: The presence of pathogenic CNVs and/or those of uncertain significance, located on chromosomes 2, 6 and Y, may be contributing to a variability in the patient's clinical condition (arachnoid cyst, single palmar fold and ligament laxity), compared to other individuals with only KS genetic alteration, making the dignosis of the disease harder.

Publisher

FapUNIFESP (SciELO)

Reference15 articles.

1. Update on Kleefstra syndrome;Willemsen MH;Mol Syndromol,2011

2. Seattle: University of Washington;Kleefstra T,2023

3. [homepage on the Internet] EHMT1 gene euchromatic histone lysine methyltransferase 1

4. The Human Gene Database [homepage on the Internet]. EHMT1 gene –euchromatic histone lysine methyltransferase 1

5. [homepage on the Internet]. Kleefstra syndrome in children

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