Influenza A virus surveillance in domestic pigs in Kazakhstan 2018-2021

Author:

Lukmanova Galina1ORCID,Klivleyeva Nailya1ORCID,Glebova Tatyana1ORCID,Ongarbayeva Nuray2ORCID,Shamenova Mira1ORCID,Saktaganov Nurbol1ORCID,Baimukhametova Assem1ORCID,Baiseiit Sagadat1ORCID,Ismagulova Dariya1ORCID,Ismailov Eldar1ORCID,Baisseyev Galikhan3ORCID,Mustafin Muafik3ORCID

Affiliation:

1. Research and Production Center for Microbiology and Virology (RPC MV), Kazakhstan

2. Research and Production Center for Microbiology and Virology (RPC MV), Kazakhstan; Al-FarabiKazakh National University (KazNU), Kazakhstan

3. Akhmet Baitursynuly Kostanay Regional University (KRU), Kazakhstan

Abstract

ABSTRACT: This study described the results of a surveillance program monitoring circulation of influenza A viruses among domestic pigs (Sus domesticus) in Kazakhstan during 2018-2021. PCR data derived from 2,513 samples (nasopharyngeal swabs) collected from swine on large pig complexes and peasant farms located in different regions of Kazakhstan revealed that about 5% of samples were positive for influenza A virus RNA. This result suggested low levels of influenza A virus circulation in Kazakhstan. Subtyping of a set of samples revealed that the main strains circulating in 2018-2019 were A/H1N1 and A/H3N2.Surveillance conducted in 2020-2021 identified only A/H1N1 viruses in swine. The PCR data were confirmed by isolation of six strains: five influenza A/H1N1 viruses and one A/H3N2 virus.

Publisher

FapUNIFESP (SciELO)

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