RNA-Seq Transcriptome Analysis of Peripheral Blood From Cattle Infected With Mycobacterium bovis Across an Experimental Time Course

Author:

McLoughlin Kirsten E.,Correia Carolina N.,Browne John A.,Magee David A.,Nalpas Nicolas C.,Rue-Albrecht Kevin,Whelan Adam O.,Villarreal-Ramos Bernardo,Vordermeier H. Martin,Gormley Eamonn,Gordon Stephen V.,MacHugh David E.

Abstract

Bovine tuberculosis, caused by infection with members of the Mycobacterium tuberculosis complex, particularly Mycobacterium bovis, is a major endemic disease affecting cattle populations worldwide, despite the implementation of stringent surveillance and control programs in many countries. The development of high-throughput functional genomics technologies, including RNA sequencing, has enabled detailed analysis of the host transcriptome to M. bovis infection, particularly at the macrophage and peripheral blood level. In the present study, we have analysed the transcriptome of bovine whole peripheral blood samples collected at −1 week pre-infection and +1, +2, +6, +10, and +12 weeks post-infection time points. Differentially expressed genes were catalogued and evaluated at each post-infection time point relative to the −1 week pre-infection time point and used for the identification of putative candidate host transcriptional biomarkers for M. bovis infection. Differentially expressed gene sets were also used for examination of cellular pathways associated with the host response to M. bovis infection, construction of de novo gene interaction networks enriched for host differentially expressed genes, and time-series analyses to identify functionally important groups of genes displaying similar patterns of expression across the infection time course. A notable outcome of these analyses was identification of a 19-gene transcriptional biosignature of infection consisting of genes increased in expression across the time course from +1 week to +12 weeks post-infection.

Funder

Science Foundation Ireland

Department of Agriculture, Food and the Marine, Ireland

Department for Environment, Food and Rural Affairs, UK Government

Seventh Framework Programme

Ciência sem Fronteiras

Wellcome Trust

Publisher

Frontiers Media SA

Subject

General Veterinary

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