Calibrating Seed-Based Heuristics to Map Short Reads With Sesame-Reference-Cited by-同舟云学术

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Calibrating Seed-Based Heuristics to Map Short Reads With Sesame

Published:2020-06-25 Issue: Volume:11 Page:
ISSN:1664-8021
Container-title:Frontiers in Genetics
language:
Short-container-title:Front. Genet.

Author:

Filion Guillaume J.,Cortini Ruggero,Zorita Eduard

Funder

European Research Council

Ministerio de Economía, Industria y Competitividad, Gobierno de España

H2020 Marie Skłodowska-Curie Actions

Publisher

Frontiers Media SA

Subject

Genetics(clinical),Genetics,Molecular Medicine

Reference58 articles.

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2. Tutorial on large deviations for the binomial distribution;Arratia;Bull. Math. Biol,1989

3. Spaced seed data structures for de novo assembly;Birol;Int. J. Genomics,2015

4. Vector seeds: an extension to spaced seeds allows substantial improvements in sensitivity and specificity;Brejová,2003

5. Spaced seeds improve k-mer-based metagenomic classification;Břinda;Bioinformatics,2015

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1. Entropy predicts sensitivity of pseudo-random seeds;2022-10-17

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