Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation

Author:

Thulasi Seetha Sithin12ORCID,Garanzini Enrico3,Tenconi Chiara45,Marenghi Cristina6ORCID,Avuzzi Barbara7,Catanzaro Mario8,Stagni Silvia8,Villa Sergio7,Chiorda Barbara Noris7,Badenchini Fabio6,Bertocchi Elena6,Sanduleanu Sebastian2,Pignoli Emanuele4,Procopio Giuseppe6,Valdagni Riccardo15ORCID,Rancati Tiziana9ORCID,Nicolai Nicola8,Messina Antonella3

Affiliation:

1. Prostate Cancer Program, Fondazione IRCCS Istituto Nazionale dei Tumori, 20133 Milan, Italy

2. Department of Precision Medicine, GROW—School for Oncology and Developmental Biology, Maastricht University, 6211 LK Maastricht, The Netherlands

3. Department of Radiology, Fondazione IRCCS Istituto Nazionale dei Tumori, 20133 Milan, Italy

4. Department of Medical Physics, Fondazione IRCCS Istituto Nazionale dei Tumori, 20133 Milan, Italy

5. Department of Oncology and Hematooncology, Università degli Studi di Milano, 20133 Milan, Italy

6. Unit of Genito-Urinary Medical Oncology, Fondazione IRCCS Istituto Nazionale dei Tumori, 20133 Milan, Italy

7. Department of Radiation Oncology, Fondazione IRCCS Istituto Nazionale dei Tumori, 20133 Milan, Italy

8. Department of Urology, Fondazione IRCCS Istituto Nazionale dei Tumori, 20133 Milan, Italy

9. Data Science Unit, Fondazione IRCCS Istituto Nazionale dei Tumori, 20133 Milan, Italy

Abstract

Stability analysis remains a fundamental step in developing a successful imaging biomarker to personalize oncological strategies. This study proposes an in silico contour generation method for simulating segmentation variations to identify stable radiomic features. Ground-truth annotation provided for the whole prostate gland on the multi-parametric MRI sequences (T2w, ADC, and SUB-DCE) were perturbed to mimic segmentation differences observed among human annotators. In total, we generated 15 synthetic contours for a given image-segmentation pair. One thousand two hundred twenty-four unfiltered/filtered radiomic features were extracted applying Pyradiomics, followed by stability assessment using ICC(1,1). Stable features identified in the internal population were then compared with an external population to discover and report robust features. Finally, we also investigated the impact of a wide range of filtering strategies on the stability of features. The percentage of unfiltered (filtered) features that remained robust subjected to segmentation variations were T2w—36% (81%), ADC—36% (94%), and SUB—43% (93%). Our findings suggest that segmentation variations can significantly impact radiomic feature stability but can be mitigated by including pre-filtering strategies as part of the feature extraction pipeline.

Funder

5 per 1000

Italian Ministry of Health 2016

Fondazione Italo Monzino

Publisher

MDPI AG

Subject

Medicine (miscellaneous)

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