Affiliation:
1. Orange Labs, 38229 Meylan, France
2. Faculty of Medicine, Université Grenoble Alpes, AGEIS EA 7407 Tools for e-Gnosis Medical, 38700 La Tronche, France
Abstract
The development of phylogenetic trees based on RNA or DNA sequences generally requires a precise and limited choice of important RNAs, e.g., messenger RNAs of essential proteins or ribosomal RNAs (like 16S), but rarely complete genomes, making it possible to explain evolution and speciation. In this article, we propose revisiting a classic phylogeny of archaea from only the information on the succession of nucleotides of their entire genome. For this purpose, we use a new tool, the unsupervised classifier Maxwell, whose principle lies in the Burrows–Wheeler compression transform, and we show its efficiency in clustering whole archaeal genomes.
Subject
Inorganic Chemistry,Organic Chemistry,Physical and Theoretical Chemistry,Computer Science Applications,Spectroscopy,Molecular Biology,General Medicine,Catalysis
Reference41 articles.
1. Sur la division des corps matériels en parties;Steinhaus;Bull. Acad. Polon. Sci.,1957
2. Some Methods for classification and Analysis of Multivariate Observations;MacQueen;Proceedings of 5th Berkeley Symposium on Mathematical Statistics and Probability,1967
3. Une nouvelle méthode en classification automatique et reconnaissance des formes la méthode des nuées dynamiques;Diday;Rev. Stat. Appl.,1971
4. Support-vector networks;Cortes;Mach. Learn.,1995
5. Support vector machines for hyperspectral remote sensing classification;Gualtieri;Proc. SPIE,1998
Cited by
1 articles.
订阅此论文施引文献
订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献