A Novel LSTM-Based Machine Learning Model for Predicting the Activity of Food Protein-Derived Antihypertensive Peptides

Author:

Liao Wang12ORCID,Yan Siyuan12,Cao Xinyi12,Xia Hui12ORCID,Wang Shaokang12ORCID,Sun Guiju12ORCID,Cai Kaida134

Affiliation:

1. Key Laboratory of Environmental Medicine and Engineering of Ministry of Education, School of Public Health, Southeast University, Nanjing 210009, China

2. Department of Nutrition and Food Hygiene, School of Public Health, Southeast University, Nanjing 210009, China

3. Department of Epidemiology & Biostatistics, School of Public Health, Southeast University, Nanjing 210009, China

4. Department of Statistics and Actuarial Sciences, School of Mathematics, Southeast University, Nanjing 210009, China

Abstract

Food protein-derived antihypertensive peptides are a representative type of bioactive peptides. Several models based on partial least squares regression have been constructed to delineate the relationship between the structure and activity of the peptides. Machine-learning-based models have been applied in broad areas, which also indicates their potential to be incorporated into the field of bioactive peptides. In this study, a long short-term memory (LSTM) algorithm-based deep learning model was constructed, which could predict the IC50 value of the peptide in inhibiting ACE activity. In addition to the test dataset, the model was also validated using randomly synthesized peptides. The LSTM-based model constructed in this study provides an efficient and simplified method for screening antihypertensive peptides from food proteins.

Funder

National Natural Science Foundation of China

High Level Personnel Project of Jiangsu Province

CAST

Southeast University

Publisher

MDPI AG

Subject

Chemistry (miscellaneous),Analytical Chemistry,Organic Chemistry,Physical and Theoretical Chemistry,Molecular Medicine,Drug Discovery,Pharmaceutical Science

Reference52 articles.

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5. Antihypertensive Peptides from Food Proteins;Aluko;Annu. Rev. Food Sci. Technol.,2015

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