Molecular Periphery Design Allows Control of the New Nitrofurans Antimicrobial Selectivity

Author:

Vinogradova Lyubov1,Lukin Alexey1ORCID,Komarova Kristina1,Zhuravlev Maxim1,Fadeev Artem1,Chudinov Mikhail1ORCID,Rogacheva Elizaveta2,Kraeva Lyudmila2,Gureev Maxim3ORCID,Porozov Yuri45ORCID,Dogonadze Marine6,Vinogradova Tatiana6

Affiliation:

1. Lomonosov Institute of Fine Chemical Technologies, MIREA—Russian Technological University, 119454 Moscow, Russia

2. Pasteur Institute of Epidemiology and Microbiology, 197101 Saint Petersburg, Russia

3. Institute of Cytology, Russian Academy of Sciences, Tikhoretsky Ave. 4, 194064 Saint Petersburg, Russia

4. Laboratory of Angiopathology, The Institute of General Pathology and Pathophysiology, 8 Baltiyskaya Street, 125315 Moscow, Russia

5. Advitam Laboratory, Mihaila Shushkaloviћа 13, 11030 Belgrade, Serbia

6. Saint-Petersburg State Research Institute of Phthisiopulmonology of the Ministry of Healthcare of the Russian Federation, 191036 Saint Petersburg, Russia

Abstract

A series of 13 new 3-substituted 5-(5-nitro-2-furyl)-1,2,4-oxadiazoles was synthesized from different aminonitriles. All compounds were screened in the disc diffusion test at a 100 μg/mL concentration to determine the bacterial growth inhibition zone presence and diameter, and then the minimum inhibitory concentrations (MICs) were determined for the most active compounds by serial dilution. The compounds showed antibacterial activity against ESKAPE bacteria, predominantly suppressing the growth of 5 species out of the panel. Some compounds had similar or lower MICs against ESKAPE pathogens compared to ciprofloxacin, nitrofurantoin, and furazidin. In particular, 3-azetidin-3-yl-5-(5-nitro-2-furyl)-1,2,4-oxadiazole (2h) inhibited S. aureus at a concentration lower than all comparators. Compound 2e (5-(5-nitro-2-furyl)-3-[4-(pyrrolidin-3-yloxy)phenyl]-1,2,4-oxadiazole) was active against Gram-positive ESKAPE pathogens as well as M. tuberculosis. Differences in the molecular periphery led to high selectivity for the compounds. The induced-fit docking (IFD) modeling technique was applied to in silico research. Molecular docking results indicated the targeting of compounds against various nitrofuran-associated biological targets.

Funder

Ministry of Science and Higher Education of the Russian Federation

Publisher

MDPI AG

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