Multiple Introductions of Moniliophthora roreri from the Amazon to the Pacific Region in Ecuador and Shared High Azoxystrobin Sensitivity

Abstract

One of the main problems in the production of cacao in Ecuador is the disease caused by the fungus Moniliophthora roreri (frosty pod rot) which affects the pods. Here, we evaluate the genetic diversity of this fungus in Ecuador, and its sensitivity to the fungicide azoxystrobin. We evaluated 76 monosporic cultures from the Amazon and the Pacific coast regions. In vitro sensitivity assays tested several doses of the fungicide azoxystrobin to determine the percent of growth inhibition and the IC50. Concentrations of 1 to 0.1 µg mL−1 inhibited the growth of at least 91% of the isolates. Three isolates were the less sensitive (IC50 = 0.0220–0.0364 µg mL−1), two from Guayas (Pacific coast) and one from Sucumbíos (Amazon) provinces. However, M. roreri is highly sensitive, and it could be used in integrated management of the disease. Genetic analyses were carried out by amplifying microsatellite markers (SSR). All the genetic diversity statistics show a higher diversity in the Amazon compared to samples of the coast region; however, the molecular variance was low (FST = 0.11). Discriminant analysis clearly distinguishes three clusters concurrent with the provinces (Sucumbíos, Orellana and El Oro) and a group with the rest of the provinces. Minimum spanning networks shows, unexpectedly, that M. roreri from the coast were derived from at least three independent introductions from the Amazon. Findings are discussed in light of previous Pan-American genetic studies and available historical reports.