Endophytic Bacteria in Ricinus communis L.: Diversity of Bacterial Community, Plant−Growth Promoting Traits of the Isolates and Its Effect on Cu and Cd Speciation in Soil

Abstract

Ricinus communis L. shows certain tolerance to and good accumulation ability with heavy metals. Endophytic bacteria−enhanced phytoremediation is an effective method to improve heavy metal extraction efficiency. Here, for better application of castor in phytoremediation, the Illumina high−throughput sequencing was carried out to reveal the endophytic bacterial community in the tissues of castor grown in two locations, and traditional microbial cultivation was used to isolate endophytic bacteria from castor. The dominant bacterial phyla were Proteobacteria, Bacteroidetes, Actinobacteria, Firmicutes and Acidobacteria, and Proteobacteria was absolutely dominate in all castor tissues. There were significant differences in the composition of endophytic bacterial communities between castor grown in two sites, with obvious variation in the relative abundance of the dominant phylum. The samples from two sites also had their own unique dominant bacterial genera. The analysis of alpha diversity illustrated that the diversity and species richness of endophytic bacteria community in different parts of castor sampled in Tonglushan mining area were lower than those in Gangxia village, Yangxin county. In total, there were 44 endophytic bacteria strains isolated from the tissues of castor, of which 42 strains possessed three or more growth−promoting properties. Most of these isolates were tolerant to Cu or Cd to varying degrees. Eight isolates were selected for further Cu mobilization and soil incubation experiments. Strains TR8, TR18, TR21, YL1, YS3 and YS5 could well solubilize Cu2(OH)2CO3 in medium. Strain YS3 had the best effect on increasing soil DTPA−Cu and DTPA−Cd contents by 8.4% and 6.9%, respectively. Inoculated endophytic isolates were conducive to the conversion of heavy metal forms from insoluble to relatively unstable, and could increase available phosphate content in soil (10.8–29.2%). Therefore, the plant growth−promoting endophytes screened from castor have great application prospects and can provide important support for the microbial−assisted phytoremediation of heavy metal−contaminated soil.