Variations in Soil Organic Carbon Fractions and Microbial Community in Rice Fields under an Integrated Cropping System

Abstract

Combining rice cultivation and aquaculture into an integrated cropping system is a management approach that enhances the sustainability of rice fields. However, how soil characteristics influence soil microbial community characteristics following implementation of such an integrated system, particularly in the waterlogged paddies of the Pearl River Delta, is poorly understood. An integrated cropping system (rice–fish–duck integrated cropping system, RFD) and a rice–pepper rotation system (RPS) were compared using a conventional rice cropping system (CRS) as a reference. We used phospholipid-derived fatty acid (PLFA) analysis to assess soil microbial community structure and function and measured soil nutrient content and organic carbon fractions. Our results indicated that the soil nutrient content, organic carbon fractions, and C-hydrolyzing activities differed among the cropping systems. The RFD resulted in higher microbial PLFA concentrations and a lower ratio of Gram-positive to Gram-negative bacteria than CRS. Additionally, the integrated system reduced microbial nutrient stress by increasing soil pH. Further analysis revealed that active soil organic carbon significantly affected the soil microbial community. Thus, the RFD integrated cropping systems that alter the combined actions of pH and active organic carbon fractions can be used to improve soil microbial communities.