Dual-Stream Spatiotemporal Networks with Feature Sharing for Monitoring Animals in the Home Cage

Author:

Nwokedi Ezechukwu Israel1ORCID,Bains Rasneer Sonia2ORCID,Bidaut Luc3ORCID,Ye Xujiong1ORCID,Wells Sara2ORCID,Brown James M.1ORCID

Affiliation:

1. School of Computer Science, College of Science, University of Lincoln, Brayford Pool, Lincoln LN6 7TS, UK

2. Mary Lyon Centre at MRC Harwell, Oxfordshire OX11 0RD, UK

3. Independent Researcher, Lincoln LN6 7TS, UK

Abstract

This paper presents a spatiotemporal deep learning approach for mouse behavioral classification in the home-cage. Using a series of dual-stream architectures with assorted modifications for optimal performance, we introduce a novel feature sharing approach that jointly processes the streams at regular intervals throughout the network. The dataset in focus is an annotated, publicly available dataset of a singly-housed mouse. We achieved even better classification accuracy by ensembling the best performing models; an Inception-based network and an attention-based network, both of which utilize this feature sharing attribute. Furthermore, we demonstrate through ablation studies that for all models, the feature sharing architectures consistently outperform the conventional dual-stream having standalone streams. In particular, the inception-based architectures showed higher feature sharing gains with their increase in accuracy anywhere between 6.59% and 15.19%. The best-performing models were also further evaluated on other mouse behavioral datasets.

Funder

National Centre for the Replacement, Refinement and Reduction of Animals in Research

Publisher

MDPI AG

Subject

Electrical and Electronic Engineering,Biochemistry,Instrumentation,Atomic and Molecular Physics, and Optics,Analytical Chemistry

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