E-MuLA: An Ensemble Multi-Localized Attention Feature Extraction Network for Viral Protein Subcellular Localization

Author:

Bakanina Kissanga Grace-Mercure1,Zulfiqar Hasan2ORCID,Gao Shenghan3,Yussif Sophyani Banaamwini4ORCID,Momanyi Biffon Manyura4ORCID,Ning Lin5,Lin Hao1ORCID,Huang Cheng-Bing6

Affiliation:

1. School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 610054, China

2. Yangtze Delta Region Institute (Huzhou), University of Electronic Science and Technology of China, Huzhou 313001, China

3. School of Computer Science, Georgia Institute of Technology, Atlanta, GA 30332, USA

4. School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu 610056, China

5. School of Healthcare Technology, Chengdu Neusoft University, Chengdu 611844, China

6. School of Computer Science and Technology, Aba Teachers University, Aba 623002, China

Abstract

Accurate prediction of subcellular localization of viral proteins is crucial for understanding their functions and developing effective antiviral drugs. However, this task poses a significant challenge, especially when relying on expensive and time-consuming classical biological experiments. In this study, we introduced a computational model called E-MuLA, based on a deep learning network that combines multiple local attention modules to enhance feature extraction from protein sequences. The superior performance of the E-MuLA has been demonstrated through extensive comparisons with LSTM, CNN, AdaBoost, decision trees, KNN, and other state-of-the-art methods. It is noteworthy that the E-MuLA achieved an accuracy of 94.87%, specificity of 98.81%, and sensitivity of 84.18%, indicating that E-MuLA has the potential to become an effective tool for predicting virus subcellular localization.

Funder

National Nature Science Foundation of China

Publisher

MDPI AG

Reference42 articles.

1. Predicting the subcellular localization of viral proteins within a mammalian host cell;Scott;Virol. J.,2006

2. A review from biological mapping to computation-based subcellular localization;Li;Mol. Ther. Nucleic Acid,2023

3. PepFormer: End-to-End transformer-based siamese network to predict and enhance peptide detectability based on sequence only;Cheng;Anal. Chem.,2021

4. Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells;Shen;Biopolym. Orig. Res. Biomol.,2007

5. RAVAR: A curated repository for rare variant-trait associations;Cao;Nucleic Acids Res.,2024

Cited by 1 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

1. Protein subcellular localization prediction tools;Computational and Structural Biotechnology Journal;2024-12

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