Dataset of 3β-Corner and 3β-Corner-like Structures

Author:

Rudnev Vladimir R.1,Kulikova Liudmila I.1,Nikolsky Kirill S.1,Petrovsky Denis V.1,Stepanov Alexander A.1ORCID,Malsagova Kristina A.1ORCID,Kaysheva Anna L.1ORCID

Affiliation:

1. Biobanking Group, Branch of Institute of Biomedical Chemistry “Scientific and Education Center”, 109028 Moscow, Russia

Abstract

The study is devoted to the creation of a dataset of protein structural motifs of the 3β-corner type. The relevance and importance of creating a dataset of 3β-corners is determined by the fact that this structure can be an embryo or a ready-made structural block in the process of protein folding, and can also act as an independent object of research in the field of structural biology. The dataset also contains 3β-corner-like structures that are geometrically similar to 3β-corners. The dataset consists of 45,896 structures. For each motif, its characteristics are presented: the name of the protein in which the 3β-corner is recognized, the method and resolution of the protein structure, the coordinates of localization in the protein, the secondary structure of the amino acid sequence, the gyration radius, the solvent-accessible area, and the composition of the elements of the secondary structure. The dataset will allow a comprehensive study of structures on a large scale and advance the understanding of the features and patterns of their structural organization.

Funder

Russian Federation Fundamental Research Program

Publisher

MDPI AG

Subject

Process Chemistry and Technology,Chemical Engineering (miscellaneous),Bioengineering

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