Rapid and Label-Free Histopathology of Oral Lesions Using Deep Learning Applied to Optical and Infrared Spectroscopic Imaging Data

Author:

Confer Matthew P.1ORCID,Falahkheirkhah Kianoush12ORCID,Surendran Subin3ORCID,Sunny Sumsum P.4,Yeh Kevin15ORCID,Liu Yen-Ting16ORCID,Sharma Ishaan1,Orr Andres C.1,Lebovic Isabella5,Magner William J.3ORCID,Sigurdson Sandra Lynn3,Aguirre Alfredo7,Markiewicz Michael R.38,Suresh Amritha34,Hicks Wesley L.3,Birur Praveen9ORCID,Kuriakose Moni Abraham3410,Bhargava Rohit1256111213

Affiliation:

1. Beckman Institute for Advanced Science and Technology, University of Illinois Urbana Champaign, Urbana, IL 61820, USA

2. Department of Chemical and Biomolecular Engineering, University of Illinois Urbana Champaign, Urbana, IL 61820, USA

3. Head & Neck Surgery, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA

4. Head and Neck Surgery, Mazumdar Shaw Medical Foundation, Narayana Health City, Bangalore 560099, India

5. Department of Bioengineering, University of Illinois Urbana Champaign, Urbana, IL 61820, USA

6. Department of Electrical and Computer Engineering, University of Illinois Urbana Champaign, Urbana, IL 61820, USA

7. Oral Diagnostic Sciences, University at Buffalo School of Dental Medicine, Buffalo, NY 14215, USA

8. Oral and Maxillofacial Surgery, University at Buffalo School of Dental Medicine, Buffalo, NY 14215, USA

9. KLE Society Institute of Dental Sciences, Bangalore 560099, India

10. Karkinos Healthcare, Kochi 682017, India

11. Department of Chemistry, University of Illinois Urbana Champaign, Urbana, IL 61820, USA

12. Department of Mechanical Science and Engineering, University of Illinois Urbana Champaign, Urbana, IL 61820, USA

13. Cancer Center at Illinois, University of Illinois Urbana Champaign, Urbana, IL 61820, USA

Abstract

Oral potentially malignant disorders (OPMDs) are precursors to over 80% of oral cancers. Hematoxylin and eosin (H&E) staining, followed by pathologist interpretation of tissue and cellular morphology, is the current gold standard for diagnosis. However, this method is qualitative, can result in errors during the multi-step diagnostic process, and results may have significant inter-observer variability. Chemical imaging (CI) offers a promising alternative, wherein label-free imaging is used to record both the morphology and the composition of tissue and artificial intelligence (AI) is used to objectively assign histologic information. Here, we employ quantum cascade laser (QCL)-based discrete frequency infrared (DFIR) chemical imaging to record data from oral tissues. In this proof-of-concept study, we focused on achieving tissue segmentation into three classes (connective tissue, dysplastic epithelium, and normal epithelium) using a convolutional neural network (CNN) applied to three bands of label-free DFIR data with paired darkfield visible imaging. Using pathologist-annotated H&E images as the ground truth, we demonstrate results that are 94.5% accurate with the ground truth using combined information from IR and darkfield microscopy in a deep learning framework. This chemical-imaging-based workflow for OPMD classification has the potential to enhance the efficiency and accuracy of clinical oral precancer diagnosis.

Funder

National Institutes of Health

National Cancer Institute

Publisher

MDPI AG

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4. Barnes, L., Evenson, J.W., Reichart, P., and Sidransky, D. (2005). Pathology and Genetics of Head and Neck Tumours, IARC Press.

5. El-Naggar, A.K., Chan, J.K.C., Grandis, J.R., Takata, T., and Slootweg, P.J. (2017). WHO Classification of Head and Neck Tumours, IARC Press. [4th ed.].

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