Whole-Exome and Transcriptome Sequencing Expands the Genotype of Majewski Osteodysplastic Primordial Dwarfism Type II

Author:

Marzano Flaviana1,Chiara Matteo2ORCID,Consiglio Arianna3ORCID,D’Amato Gabriele4,Gentile Mattia5ORCID,Mirabelli Valentina3ORCID,Piane Maria6ORCID,Savio Camilla7,Fabiani Marco8ORCID,D’Elia Domenica3ORCID,Sbisà Elisabetta3,Scarano Gioacchino9ORCID,Lonardo Fortunato9ORCID,Tullo Apollonia1ORCID,Pesole Graziano110ORCID,Faienza Maria Felicia11ORCID

Affiliation:

1. Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, IBIOM–CNR, 70126 Bari, Italy

2. Department of Biosciences, University of Milan, 20133 Milan, Italy

3. Institute for Biomedical Technologies, ITB-CNR, 70126 Bari, Italy

4. Neonatal Intensive Care Unit, Di Venere Hospital, 70012 Bari, Italy

5. Medical Genetics Unit, ASL Bari, 70012 Bari, Italy

6. Department of Clinical and Molecular Medicine, Sapienza University, 00185 Rome, Italy

7. Sant’Andrea University Hospital, 00185 Rome, Italy

8. Department of Experimental Medicine, Sapienza University of Rome, 00185 Rome, Italy

9. Medical Genetics Unit, AORN “San Pio”, Hosp. “G. Rummo”, 82100 Benevento, Italy

10. Department of Biosciences, Biotechnology and Biofarmaceutics, University of Bari “Aldo Moro”, 70126 Bari, Italy

11. Pediatric Section, Department of Precision and Regenerative Medicine and Ionian Area, University “A. Moro” of Bari, 70124 Bari, Italy

Abstract

Microcephalic Osteodysplastic Primordial Dwarfism type II (MOPDII) represents the most common form of primordial dwarfism. MOPD clinical features include severe prenatal and postnatal growth retardation, postnatal severe microcephaly, hypotonia, and an increased risk for cerebrovascular disease and insulin resistance. Autosomal recessive biallelic loss-of-function genomic variants in the centrosomal pericentrin (PCNT) gene on chromosome 21q22 cause MOPDII. Over the past decade, exome sequencing (ES) and massive RNA sequencing have been effectively employed for both the discovery of novel disease genes and to expand the genotypes of well-known diseases. In this paper we report the results both the RNA sequencing and ES of three patients affected by MOPDII with the aim of exploring whether differentially expressed genes and previously uncharacterized gene variants, in addition to PCNT pathogenic variants, could be associated with the complex phenotype of this disease. We discovered a downregulation of key factors involved in growth, such as IGF1R, IGF2R, and RAF1, in all three investigated patients. Moreover, ES identified a shortlist of genes associated with deleterious, rare variants in MOPDII patients. Our results suggest that Next Generation Sequencing (NGS) technologies can be successfully applied for the molecular characterization of the complex genotypic background of MOPDII.

Publisher

MDPI AG

Subject

Inorganic Chemistry,Organic Chemistry,Physical and Theoretical Chemistry,Computer Science Applications,Spectroscopy,Molecular Biology,General Medicine,Catalysis

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