A Neoteric Feature Extraction Technique to Predict the Survival of Gastric Cancer Patients

Author:

Islam Warid1ORCID,Abdoli Neman1ORCID,Alam Tasfiq E.2,Jones Meredith3,Mutembei Bornface M.3ORCID,Yan Feng3,Tang Qinggong3ORCID

Affiliation:

1. School of Electrical and Computer Engineering, University of Oklahoma, Norman, OK 73019, USA

2. School of Industrial and Systems Engineering, University of Oklahoma, Norman, OK 73019, USA

3. Stephenson School of Biomedical Engineering, University of Oklahoma, Norman, OK 73019, USA

Abstract

Background: At the time of cancer diagnosis, it is crucial to accurately classify malignant gastric tumors and the possibility that patients will survive. Objective: This study aims to investigate the feasibility of identifying and applying a new feature extraction technique to predict the survival of gastric cancer patients. Methods: A retrospective dataset including the computed tomography (CT) images of 135 patients was assembled. Among them, 68 patients survived longer than three years. Several sets of radiomics features were extracted and were incorporated into a machine learning model, and their classification performance was characterized. To improve the classification performance, we further extracted another 27 texture and roughness parameters with 2484 superficial and spatial features to propose a new feature pool. This new feature set was added into the machine learning model and its performance was analyzed. To determine the best model for our experiment, Random Forest (RF) classifier, Support Vector Machine (SVM), K-Nearest Neighbors (KNN), and Naïve Bayes (NB) (four of the most popular machine learning models) were utilized. The models were trained and tested using the five-fold cross-validation method. Results: Using the area under ROC curve (AUC) as an evaluation index, the model that was generated using the new feature pool yields AUC = 0.98 ± 0.01, which was significantly higher than the models created using the traditional radiomics feature set (p < 0.04). RF classifier performed better than the other machine learning models. Conclusions: This study demonstrated that although radiomics features produced good classification performance, creating new feature sets significantly improved the model performance.

Funder

Stephenson Cancer Center

American Cancer Society

National Science Foundation

National Institute of Health

Oklahoma Shared Clinical and Translational Resources

Oklahoma Center for the Advancement of Science and Technology

medical imaging COBRE

Midwest Biomedical Accelerator Consortium

NIH Research Evaluation and Commercialization Hub

OU Libraries’ Open Access Fund

Publisher

MDPI AG

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