Sequence-Type Classification of Brain MRI for Acute Stroke Using a Self-Supervised Machine Learning Algorithm

Author:

Na Seongwon12,Ko Yousun3ORCID,Ham Su Jung3,Sung Yu Sub45ORCID,Kim Mi-Hyun67,Shin Youngbin2,Jung Seung Chai3,Ju Chung89,Kim Byung Su8,Yoon Kyoungro110,Kim Kyung Won3ORCID

Affiliation:

1. Department of Computer Science and Engineering, Konkuk University, Seoul 05029, Republic of Korea

2. Biomedical Research Center, Asan Institute for Life Sciences, Asan Medical Center, Seoul 05505, Republic of Korea

3. Department of Radiology and Research Institute of Radiology, Asan Medical Center, University of Ulsan College of Medicine, Seoul 05505, Republic of Korea

4. Clinical Research Center, Asan Medical Center, Seoul 05505, Republic of Korea

5. Department of Convergence Medicine, University of Ulsan College of Medicine, Seoul 05505, Republic of Korea

6. Trialinformatics Inc., Seoul 05505, Republic of Korea

7. Department of Radiation Science & Technology, Jeonbuk National University, Jeonju 56212, Republic of Korea

8. Shin Poong Pharm. Co., Ltd., Seoul 06246, Republic of Korea

9. Graduate School of Clinical Pharmacy, CHA University, Pocheon-si 11160, Republic of Korea

10. Department of Smart ICT Convergence Engineering, Konkuk University, Seoul 05029, Republic of Korea

Abstract

We propose a self-supervised machine learning (ML) algorithm for sequence-type classification of brain MRI using a supervisory signal from DICOM metadata (i.e., a rule-based virtual label). A total of 1787 brain MRI datasets were constructed, including 1531 from hospitals and 256 from multi-center trial datasets. The ground truth (GT) was generated by two experienced image analysts and checked by a radiologist. An ML framework called ImageSort-net was developed using various features related to MRI acquisition parameters and used for training virtual labels and ML algorithms derived from rule-based labeling systems that act as labels for supervised learning. For the performance evaluation of ImageSort-net (MLvirtual), we compare and analyze the performances of models trained with human expert labels (MLhumans), using as a test set blank data that the rule-based labeling system failed to infer from each dataset. The performance of ImageSort-net (MLvirtual) was comparable to that of MLhuman (98.5% and 99%, respectively) in terms of overall accuracy when trained with hospital datasets. When trained with a relatively small multi-center trial dataset, the overall accuracy was relatively lower than that of MLhuman (95.6% and 99.4%, respectively). After integrating the two datasets and re-training them, MLvirtual showed higher accuracy than MLvirtual trained only on multi-center datasets (95.6% and 99.7%, respectively). Additionally, the multi-center dataset inference performances after the re-training of MLvirtual and MLhumans were identical (99.7%). Training of ML algorithms based on rule-based virtual labels achieved high accuracy for sequence-type classification of brain MRI and enabled us to build a sustainable self-learning system.

Funder

National Research Foundation of Korea

Korea government

Ministry of Health & Welfare, Republic of Korea

Publisher

MDPI AG

Subject

Clinical Biochemistry

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