Escherichia coli Infection Sepsis: An Analysis of Specifically Expressed Genes and Clinical Indicators

Abstract

Since E. coli is the most prevalent sepsis bacterium, studying its pathogenic molecular pathways may help with its early diagnosis and individualized treatment. However, few studies have investigated the molecular characterization of E. coli infection only. We extracted E. coli infection-specific genes and indicators from published data and clinical laboratory results in this study. GSE65088 showed 277, 377, and 408 DEGs for E. coli and other bacteria, E. coli and healthy groups, and other bacteria and healthy groups, respectively. DEGs, the MEgreen module with the highest relevance in WGCNA, and the first three MCODE subnetworks were used to find E. coli infection-specific hub genes. HSPA1B and TNF were verified in GSE6269 with ROC-AUCs of 0.7038 and 0.7116, respectively. CIBERSORT showed increased B-cell naive and T-cell CD4 naive infiltration in E. coli infectious sepsis. Patients infected with E. coli were younger than those infected with other pathogens. Compared to the other bacterially infectious sepsis patients, the E. coli patients had low globulin, prealbumin, creatine kinase, and high bilirubin levels. The clinically significant difference indicator IL-2, in combination with hub genes, better differentiated the healthy and E. coli groups, with an ROC-AUC of 0.8793. The study suggested that HSPA1B and TNF may be E.-coli-infection-specific genes, which may help explain the molecular mechanism of infectious sepsis.