Prediction of Myocardial Infarction Using a Combined Generative Adversarial Network Model and Feature-Enhanced Loss Function

Author:

Yu Shixiang12ORCID,Han Siyu12ORCID,Shi Mengya12,Harada Makoto23ORCID,Ge Jianhong12ORCID,Li Xuening4,Cai Xiang5,Heier Margit67ORCID,Karstenmüller Gabi8,Suhre Karsten9ORCID,Gieger Christian10,Koenig Wolfgang11ORCID,Rathmann Wolfgang12,Peters Annette713ORCID,Wang-Sattler Rui23ORCID

Affiliation:

1. TUM School of Medicine and Health, Technical University of Munich, 81675 München, Germany

2. Institute of Translational Genomics, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764 Neuherberg, Germany

3. German Center for Diabetes Research (DZD), 85764 Neuherberg, Germany

4. Biocomputing R&D Department, Beijing Huanyang Bole Consulting Co., Ltd., Beijing 100010, China

5. School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin 541214, China

6. KORA Study Centre, University Hospital of Augsburg, 86153 Augsburg, Germany

7. Institute of Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764 Neuherberg, Germany

8. Institute of Computational Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764 Neuherberg, Germany

9. Department of Physiology and Biophysics, Weill Cornell Medicine and Director of the Bioinformatics Core, Doha 24144, Qatar

10. Research Unit of Molecular Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764 Neuherberg, Germany

11. Deutsches Herzzentrum München, Technische Universität München, 80636 München, Germany

12. Institute for Biometrics and Epidemiology, German Diabetes Center, Leibniz Center for Diabetes Research, Heinrich Heine University, 40225 Düsseldorf, Germany

13. Institute for Medical Information Processing, Biometry, and Epidemiology (IBE), Pettenkofer School of Public Health, Faculty of Medicine, Ludwig-Maximilians-Universität München, 81377 München, Germany

Abstract

Accurate risk prediction for myocardial infarction (MI) is crucial for preventive strategies, given its significant impact on global mortality and morbidity. Here, we propose a novel deep-learning approach to enhance the prediction of incident MI cases by incorporating metabolomics alongside clinical risk factors. We utilized data from the KORA cohort, including the baseline S4 and follow-up F4 studies, consisting of 1454 participants without prior history of MI. The dataset comprised 19 clinical variables and 363 metabolites. Due to the imbalanced nature of the dataset (78 observed MI cases and 1376 non-MI individuals), we employed a generative adversarial network (GAN) model to generate new incident cases, augmenting the dataset and improving feature representation. To predict MI, we further utilized multi-layer perceptron (MLP) models in conjunction with the synthetic minority oversampling technique (SMOTE) and edited nearest neighbor (ENN) methods to address overfitting and underfitting issues, particularly when dealing with imbalanced datasets. To enhance prediction accuracy, we propose a novel GAN for feature-enhanced (GFE) loss function. The GFE loss function resulted in an approximate 2% improvement in prediction accuracy, yielding a final accuracy of 70%. Furthermore, we evaluated the contribution of each clinical variable and metabolite to the predictive model and identified the 10 most significant variables, including glucose tolerance, sex, and physical activity. This is the first study to construct a deep-learning approach for producing 7-year MI predictions using the newly proposed loss function. Our findings demonstrate the promising potential of our technique in identifying novel biomarkers for MI prediction.

Funder

Innovative Medicines Initiative 2 Joint Undertaking

European Union’s Horizon 2020 research and innovation programme

European Federation of Pharmaceutical Industries and Associations

German Federal Ministry of Health

Ministry of Science and Culture in North-Rhine Westphalia

German Federal Ministry of Education and Research to the German Center for Diabetes Research (DZD).

Publisher

MDPI AG

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