GSN-HVNET: A Lightweight, Multi-Task Deep Learning Framework for Nuclei Segmentation and Classification

Author:

Zhao Tengfei1ORCID,Fu Chong123ORCID,Tian Yunjia4,Song Wei1,Sham Chiu-Wing5

Affiliation:

1. School of Computer Science and Engineering, Northeastern University, Shenyang 110819, China

2. Engineering Research Center of Security Technology of Complex Network System, Ministry of Education, Shenyang 110819, China

3. Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang 110819, China

4. State Grid Liaoning Information and Communication Company, Shenyang 110006, China

5. School of Computer Science, The University of Auckland, Auckland 1142, New Zealand

Abstract

Nuclei segmentation and classification are two basic and essential tasks in computer-aided diagnosis of digital pathology images, and those deep-learning-based methods have achieved significant success. Unfortunately, most of the existing studies accomplish the two tasks by splicing two related neural networks directly, resulting in repetitive computation efforts and a redundant-and-large neural network. Thus, this paper proposes a lightweight deep learning framework (GSN-HVNET) with an encoder–decoder structure for simultaneous segmentation and classification of nuclei. The decoder consists of three branches outputting the semantic segmentation of nuclei, the horizontal and vertical (HV) distances of nuclei pixels to their mass centers, and the class of each nucleus, respectively. The instance segmentation results are obtained by combing the outputs of the first and second branches. To reduce the computational cost and improve the network stability under small batch sizes, we propose two newly designed blocks, Residual-Ghost-SN (RGS) and Dense-Ghost-SN (DGS). Furthermore, considering the practical usage in pathological diagnosis, we redefine the classification principle of the CoNSeP dataset. Experimental results demonstrate that the proposed model outperforms other state-of-the-art models in terms of segmentation and classification accuracy by a significant margin while maintaining high computational efficiency.

Funder

National Natural Science Foundation of China

Fundamental Research Funds for the Central Universities

Natural Science Foundation of Liaoning Province

Publisher

MDPI AG

Subject

Bioengineering

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4. Javed, S., Fraz, M.M., Epstein, D., Snead, D., and Rajpoot, N.M. (2018). Computational Pathology and Ophthalmic Medical Image Analysis, Springer.

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