Genome-Wide Identification, Characterization, and Transcriptomic Analysis of the Cyclin Gene Family in Brassica rapa
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Published:2022-11-13
Issue:22
Volume:23
Page:14017
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ISSN:1422-0067
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Container-title:International Journal of Molecular Sciences
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language:en
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Short-container-title:IJMS
Author:
Zulfiqar Sumer,
Zhao Tiantian,
Liu Yuanming,
Wei Lai,
Farooq Muhammad AwaisORCID,
Tabusam Javaria,
Zhao Jianjun,
Chen Xueping,
Wang Yanhua,
Xuan Shuxin,
Li Na,
Lu Yin,
Luo Shuangxia,
Shen Shuxing,
Gu Aixia
Abstract
Cyclins are involved in cell division and proliferation by activating enzymes required for the cell cycle progression. Our genome-wide analysis identified 76 cyclin genes in Brassica rapa, which were divided into nine different types (A-, B-, C-, D-, H-, L-, P-, T-, and SDS-type). Cyclin genes were unevenly scattered on all chromosomes, with a maximum of 10 on A08 and a minimum of 2 on A04. The gene structure and conserved motif analysis showed that the cyclins which belonged to the same type or subgroup have a comparable intron/exon pattern or motif. A total of 14 collinear gene pairs suggested that the B. rapa cyclin genes experienced a mass of segmental duplication. The Ka/Ks analysis revealed that the Brcyclin gene family has undergone an extensive purifying pressure. By analyzing the cis-elements in the promoters, we identified 11 cis-elements and five of them are related to the hormone response. We observed 48 potential miRNAs targeting 44 Brcyclin genes, which highlighted the involvement of miRNAs in the regulation of cyclin genes. An association analysis between the leaf size and SNPs in mutants and a transcriptome analysis of two Chinese cabbage-cabbage translocation lines also showed that the Brcyclin gene family was involved in the development of the leaves. The functional characterization of the B. rapa cyclin gene family will provide the foundation for future physiological and genetic studies in the regulation of leaf growth.
Funder
National Natural Science Foundation of China
Hebei Provincial Natural Science Fund for Distinguished Young
Natural Science Foundation and basic research project in Hebei Province
the Innovative Research Group Project of Hebei Natural Science Foundation
The Key Research and Development Program of Hebei
Innovation Capability Enhancement Program Project of Hebei Province
Subject
Inorganic Chemistry,Organic Chemistry,Physical and Theoretical Chemistry,Computer Science Applications,Spectroscopy,Molecular Biology,General Medicine,Catalysis
Cited by
3 articles.
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