Phylogeny and Evolutionary Timescale of Muscidae (Diptera: Calyptratae) Inferred from Mitochondrial Genomes
Author:
Li Xin1ORCID, Cai Xiaodong1, Ding Shuangmei2, Wang Liang1, Li Wenliang3ORCID, Liu Xiaoyan4ORCID, Zhang Chuntian5, Yang Ding1
Affiliation:
1. College of Plant Protection, China Agricultural University, Beijing 100193, China 2. The Institute of Scientific and Technical Research on Archives, National Archives Administration of China, Beijing 100050, China 3. College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China 4. College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China 5. College of Life Science, Shenyang Normal University, Shenyang 110034, China
Abstract
House flies (Muscidae) comprise the most species-rich family of the muscoid grade with over 5000 described species worldwide, and they are abundant in various terrestrial and aquatic ecosystems. The high number of species, varied appearances, complex feeding habits, and wide distributions have hindered researchers from understanding their phylogeny and evolutionary history. Here, we newly sequenced fifteen mitochondrial genomes and reconstructed the phylogenetic relationships and divergence time among eight subfamilies of Muscidae (Diptera). The best phylogenetic tree, which was inferred by IQ-Tree, recovered the monophyly for seven out of eight subfamilies (except for Mydaeinae). Based on phylogenetic analyses and morphological characteristics, we prefer the subfamily status of Azeliinae and Reinwardtiinae, and separate Stomoxyinae from Muscinae. Genus Helina Robineau-Desvoidy, 1830 was synonymized with Phaonia Robineau-Desvoidy, 1830. The divergence time estimation indicated Muscidae originated at 51.59 Ma (early Eocene). Most subfamilies had originated around 41 Ma. We provided a mtgenomic viewpoint on the phylogenetic relationships and divergence time estimation of Muscidae.
Funder
National Natural Science Foundation of China 2115 Talent Development Program of China Agricultural University
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