Terahertz Time-Domain Spectroscopy of Blood Serum for Differentiation of Glioblastoma and Traumatic Brain Injury

Author:

Vrazhnov Denis A.12ORCID,Ovchinnikova Daria A.3,Kabanova Tatiana V.3,Paulish Andrey G.45,Kistenev Yury V.1ORCID,Nikolaev Nazar A.6ORCID,Cherkasova Olga P.67ORCID

Affiliation:

1. Laboratory of Laser Molecular Imaging and Machine Learning, Tomsk State University, 36, Lenin Ave., 634050 Tomsk, Russia

2. V.E. Zuev Institute of Atmospheric Optics of Siberian Branch, Russian Academy of Sciences, 634055 Tomsk, Russia

3. Institute of Applied Mathematics and Computer Science, Tomsk State University, 634050 Tomsk, Russia

4. Novosibirsk Division, Rzhanov Institute of Semiconductor Physics, Siberian Branch, Russian Academy of Sciences, “Technological Design Institute of Applied Microelectronics”, 630090 Novosibirsk, Russia

5. Faculty of Radio Engineering and Electronics, Novosibirsk State Technical University, Karl Marks Avenue, 20, 630073 Novosibirsk, Russia

6. Institute of Automation and Electrometry, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia

7. National Research Centre “Kurchatov Institute”, 123182 Moscow, Russia

Abstract

The possibility of the differentiation of glioblastoma from traumatic brain injury through blood serum analysis by terahertz time-domain spectroscopy and machine learning was studied using a small animal model. Samples of a culture medium and a U87 human glioblastoma cell suspension in the culture medium were injected into the subcortical brain structures of groups of mice referred to as the culture medium injection groups and glioblastoma groups, accordingly. Blood serum samples were collected in the first, second, and third weeks after the injection, and their terahertz transmission spectra were measured. The injection caused acute inflammation in the brain during the first week, so the culture medium injection group in the first week of the experiment corresponded to a traumatic brain injury state. In the third week of the experiment, acute inflammation practically disappeared in the culture medium injection groups. At the same time, the glioblastoma group subjected to a U87 human glioblastoma cell injection had the largest tumor size. The THz spectra were analyzed using two dimensionality reduction algorithms (principal component analysis and t-distributed Stochastic Neighbor Embedding) and three classification algorithms (Support Vector Machine, Random Forest, and Extreme Gradient Boosting Machine). Constructed prediction data models were verified using 10-fold cross-validation, the receiver operational characteristic curve, and a corresponding area under the curve analysis. The proposed machine learning pipeline allowed for distinguishing the traumatic brain injury group from the glioblastoma group with 95% sensitivity, 100% specificity, and 97% accuracy with the Extreme Gradient Boosting Machine. The most informative features for these groups’ differentiation were 0.37, 0.40, 0.55, 0.60, 0.70, and 0.90 THz. Thus, an analysis of mouse blood serum using terahertz time-domain spectroscopy and machine learning makes it possible to differentiate glioblastoma from traumatic brain injury.

Funder

State assignment project of the IA&E SB RAS

NRC “Kurchatov Institute”

Tomsk State University

Publisher

MDPI AG

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