PL-PatchSurfer: A Novel Molecular Local Surface-Based Method for Exploring Protein-Ligand Interactions-Reference-Cited by-同舟云学术

PL-PatchSurfer: A Novel Molecular Local Surface-Based Method for Exploring Protein-Ligand Interactions

Published:2014-08-27 Issue:9 Volume:15 Page:15122-15145
ISSN:1422-0067
Container-title:International Journal of Molecular Sciences
language:en
Short-container-title:IJMS

Author:

Hu Bingjie,Zhu Xiaolei,Monroe Lyman,Bures Mark,Kihara Daisuke

Funder

NIH

NSF

National Research Foundation of Korea

Publisher

MDPI AG

Subject

Inorganic Chemistry,Organic Chemistry,Physical and Theoretical Chemistry,Computer Science Applications,Spectroscopy,Molecular Biology,General Medicine,Catalysis

Link

http://www.mdpi.com/1422-0067/15/9/15122/pdf

Reference57 articles.

1. The Protein Data Bank

2. A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: Application to ligand prediction;Hoffmann;BMC Bioinform.,2010

3. Identification of the ligand binding sites on the molecular surface of proteins;Kinoshita;Protein Sci.,2005

4. Siteengines: Recognition and comparison of binding sites and protein–protein interfaces;Shulman-Peleg;Nucleic Acids Res.,2005

5. A new method to detect related function among proteins independent of sequence and fold homology;Schmitt;J. Mol. Biol.,2002

Cited by 21 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. PL-PatchSurfer3: Improved Structure-Based Virtual Screening for Structure Variation Using 3D Zernike Descriptors;2024-02-27

2. Quantitative comparison of protein-protein interaction interface using physicochemical feature-based descriptors of surface patches;Frontiers in Molecular Biosciences;2023-02-06

3. ToDD: Topological Compound Fingerprinting in Computer-Aided Drug Discovery;2022-11-08

4. Classification of Protein-Binding Sites Using a Spherical Convolutional Neural Network;Journal of Chemical Information and Modeling;2022-11-07

5. Molecular insights into the binding model and response mechanisms of triclosan with lysozyme;Journal of Molecular Liquids;2022-07