Hotspot Regions of Quantitative Trait Loci and Candidate Genes for Ear-Related Traits in Maize: A Literature Review

Author:

Zhang Xingjie1,Sun Jiachen2,Zhang Yudong3,Li Jinfeng1,Liu Meichen1,Li Linzhuo1,Li Shaoxiong1,Wang Tingzhao2,Shaw Ranjan Kumar3,Jiang Fuyan3,Fan Xingming3ORCID

Affiliation:

1. School of Agriculture, Yunnan University, Kunming 650500, China

2. College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China

3. Institute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming 650205, China

Abstract

In this study, hotspot regions, QTL clusters, and candidate genes for eight ear-related traits of maize (ear length, ear diameter, kernel row number, kernel number per row, kernel length, kernel width, kernel thickness, and 100-kernel weight) were summarized and analyzed over the past three decades. This review aims to (1) comprehensively summarize and analyze previous studies on QTLs associated with these eight ear-related traits and identify hotspot bin regions located on maize chromosomes and key candidate genes associated with the ear-related traits and (2) compile major and stable QTLs and QTL clusters from various mapping populations and mapping methods and techniques providing valuable insights for fine mapping, gene cloning, and breeding for high-yield and high-quality maize. Previous research has demonstrated that QTLs for ear-related traits are distributed across all ten chromosomes in maize, and the phenotypic variation explained by a single QTL ranged from 0.40% to 36.76%. In total, 23 QTL hotspot bins for ear-related traits were identified across all ten chromosomes. The most prominent hotspot region is bin 4.08 on chromosome 4 with 15 QTLs related to eight ear-related traits. Additionally, this study identified 48 candidate genes associated with ear-related traits. Out of these, five have been cloned and validated, while twenty-eight candidate genes located in the QTL hotspots were defined by this study. This review offers a deeper understanding of the advancements in QTL mapping and the identification of key candidates associated with eight ear-related traits. These insights will undoubtedly assist maize breeders in formulating strategies to develop higher-yield maize varieties, contributing to global food security.

Funder

National Natural Science Foundation of China

Yunnan Provincial Science and Technology Talent and Platform Program

Publisher

MDPI AG

Subject

Genetics (clinical),Genetics

Reference112 articles.

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3. Huo, D., Ning, Q., Shen, X.M., Liu, L., and Zhang, Z.X. (2016). QTL mapping of kernel number-related traits and validation of one major QTL for ear length in maize. PLoS ONE, 11.

4. Wang, D.Z. (2018). Identification and Mapping of Quantitative Trait Lociconferring Cold Tolerance at the Early Seedlingstage in Maize (Zea mays L.). [Master’s Thesis, Shenyang Agricultural University].

5. QTL of kernel yield of maize and its Components’ traits: Research Progress;Xie;Chin. Agric. Sci. Bull.,2022

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