Exploration of Interpretability Techniques for Deep COVID-19 Classification Using Chest X-ray Images

Author:

Chatterjee Soumick123ORCID,Saad Fatima45ORCID,Sarasaen Chompunuch456ORCID,Ghosh Suhita27,Krug Valerie27,Khatun Rupali89,Mishra Rahul10,Desai Nirja11,Radeva Petia812,Rose Georg4513,Stober Sebastian27ORCID,Speck Oliver561314ORCID,Nürnberger Andreas1213ORCID

Affiliation:

1. Data and Knowledge Engineering Group, Otto von Guericke University, 39106 Magdeburg, Germany

2. Faculty of Computer Science, Otto von Guericke University, 39106 Magdeburg, Germany

3. Genomics Research Centre, Human Technopole, 20157 Milan, Italy

4. Institute for Medical Engineering, Otto von Guericke University, 39106 Magdeburg, Germany

5. Research Campus STIMULATE, Otto von Guericke University, 39106 Magdeburg, Germany

6. Biomedical Magnetic Resonance, Otto von Guericke University, 39106 Magdeburg, Germany

7. Artificial Intelligence Lab, Otto von Guericke University, 39106 Magdeburg, Germany

8. Department of Mathematics and Computer Science, University of Barcelona, 08028 Barcelona, Spain

9. Translational Radiobiology, Department of Radiation Oncology, Universitätsklinikum Erlangen, 91054 Erlangen, Germany

10. Apollo Hospitals, Bilaspur 495006, India

11. HCG Cancer Centre, Vadodara 390012, India

12. Computer Vision Centre, 08193 Cerdanyola, Spain

13. Centre for Behavioural Brain Sciences, 39106 Magdeburg, Germany

14. German Centre for Neurodegenerative Diseases, 39106 Magdeburg, Germany

Abstract

The outbreak of COVID-19 has shocked the entire world with its fairly rapid spread, and has challenged different sectors. One of the most effective ways to limit its spread is the early and accurate diagnosing of infected patients. Medical imaging, such as X-ray and computed tomography (CT), combined with the potential of artificial intelligence (AI), plays an essential role in supporting medical personnel in the diagnosis process. Thus, in this article, five different deep learning models (ResNet18, ResNet34, InceptionV3, InceptionResNetV2, and DenseNet161) and their ensemble, using majority voting, have been used to classify COVID-19, pneumoniæ and healthy subjects using chest X-ray images. Multilabel classification was performed to predict multiple pathologies for each patient, if present. Firstly, the interpretability of each of the networks was thoroughly studied using local interpretability methods—occlusion, saliency, input X gradient, guided backpropagation, integrated gradients, and DeepLIFT—and using a global technique—neuron activation profiles. The mean micro F1 score of the models for COVID-19 classifications ranged from 0.66 to 0.875, and was 0.89 for the ensemble of the network models. The qualitative results showed that the ResNets were the most interpretable models. This research demonstrates the importance of using interpretability methods to compare different models before making a decision regarding the best performing model.

Funder

European Structural and Investment Funds

Federal Ministry of Education and Research

Publisher

MDPI AG

Reference83 articles.

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