Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa

Author:

Ho Peiying1ORCID,Dam Linh Chi12,Koh Wei Ren Ryanna13,Nai Rui Si1,Nah Qian Hui1,Rajaie Fizla Faeqa Binte Muhammad1,Chan Chia Ching14,Aung Thet Tun5ORCID,Goh Shin Giek67,Fang You67ORCID,Lim Zhining58,Koh Ming Guang58,Demott Michael9,Boucher Yann Felix810ORCID,Malleret Benoit5ORCID,Gin Karina Yew-Hoong6711ORCID,Dedon Peter19ORCID,Moreira Wilfried15812ORCID

Affiliation:

1. Antimicrobial Resistance Interdisciplinary Research Group (AMR IRG), Singapore-MIT Alliance for Research and Technology (SMART) Centre, Singapore 117576, Singapore

2. Signature Research Program in Cardiovascular & Metabolic Disorders, Duke-NUS Medical School, Singapore 169857, Singapore

3. Department of Medicine, National University Hospital, National University Health System, Singapore 119074, Singapore

4. Thrixen Pte Ltd., Singapore 048619, Singapore

5. Immunology Translational Research Programme, Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597, Singapore

6. Energy & Environmental Sustainability Solutions for Megacities (E2S2) Program, Campus for Research Excellence and Technological Enterprise (CREATE), Singapore 117576, Singapore

7. Department of Civil & Environmental Engineering, National University of Singapore, Singapore 117576, Singapore

8. Singapore Centre for Environmental Life Science Engineering (SCELSE), Singapore 637551, Singapore

9. Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA

10. Saw Swee Hock School of Public Health, National University of Singapore, Singapore 117549, Singapore

11. Environmental Research Institute, National University of Singapore, Singapore 117576, Singapore

12. Life Science Institute, National University of Singapore, Singapore 117456, Singapore

Abstract

Multidrug-resistant P. aeruginosa infections pose a serious public health threat due to the rise in antimicrobial resistance. Phage therapy has emerged as a promising alternative. However, P. aeruginosa has evolved various mechanisms to thwart phage attacks, making it crucial to decipher these resistance mechanisms to develop effective therapeutic strategies. In this study, we conducted a forward-genetic screen of the P. aeruginosa PA14 non-redundant transposon library (PA14NR) to identify dominant-negative mutants displaying phage-resistant phenotypes. Our screening process revealed 78 mutants capable of thriving in the presence of phages, with 23 of them carrying insertions in genes associated with membrane composition. Six mutants exhibited total resistance to phage infection. Transposon insertions were found in genes known to be linked to phage-resistance such as galU and a glycosyl transferase gene, as well as novel genes such as mexB, lasB, and two hypothetical proteins. Functional experiments demonstrated that these genes played pivotal roles in phage adsorption and biofilm formation, indicating that altering the bacterial membrane composition commonly leads to phage resistance in P. aeruginosa. Importantly, these mutants displayed phenotypic trade-offs, as their resistance to phages inversely affected antibiotic resistance and hindered biofilm formation, shedding light on the complex interplay between phage susceptibility and bacterial fitness. This study highlights the potential of transposon mutant libraries and forward-genetic screens in identifying key genes involved in phage-host interactions and resistance mechanisms. These findings support the development of innovative strategies for combating antibiotic-resistant pathogens.

Funder

Singapore National Research Foundation

Singapore National Medical Research Council (NMRC) Ministry of Health (MOH) Open Fund

Singapore–MIT Alliance for Research and Technology (SMART) program core funding

Singapore Center for Environmental Life Sciences and Engineering (SCELSE) Research Center of Excellence core funding

NUHS start-up

NUSMed

Publisher

MDPI AG

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