An Economic Method to Identify Cultivars and Elite Lines in Radish (Raphanus sativus L.) for Small Seed Companies and Independent Breeders

Abstract

Radish is a root vegetable crop, and many F1 cultivars have been developed by exploiting heterosis. Considerable time and resources are required to test the performance and combining ability of F1 cultivars and parental lines; therefore, economical methods to identify them are needed before field tests. This study was conducted to determine the minimum number of markers needed to identify cultivars and elite lines. PCR-based markers were applied to radish cultivars and elite lines and selected based on chromosomal location, polymorphic information content, and allele frequency. The power of selected marker sets to detect genetically similar cultivars or elite lines was confirmed using cultivars with high genetic similarity and elite lines with the same parents. Eleven markers successfully identified not only all 105 radish cultivars tested but also cultivars with high genetic similarity reported in previous studies. Fourteen markers, including the nine among 11 markers for cultivar identification, also successfully distinguished all 115 elite lines tested, including ones with the same parents and separated at F2–F6 generations. The markers developed for the identification of radish cultivars and elite lines require only 11 and 14 markers, respectively, and simple PCR and gel electrophoresis instruments. This method is very simple and can be easily applied to other crops.