Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening

Author:

Avnat Eden1ORCID,Shapira Guy12ORCID,Shoval Shelly3,Israel-Elgali Ifat14,Alkelai Anna5,Shuldiner Alan R.5,Gonzaga-Jauregui Claudia56ORCID,Zidan Jamal7,Maray Taiseer8,Shomron Noam124ORCID,Friedman Eitan19

Affiliation:

1. Faculty of Medicine, Tel Aviv University, Tel Aviv 69978, Israel

2. Edmond J. Safra Center for Bioinformatics, Tel Aviv University, Tel Aviv 69978, Israel

3. The Susanne Levy Gertner Oncogenetics Unit, Institute of Human Genetics, Sheba Medical Center, Ramat Gan 52621, Israel

4. Sagol School of Neuroscience, Tel-Aviv University, Tel Aviv 69978, Israel

5. Regeneron Genetics Center, Tarrytown, NY 10591, USA

6. International Laboratory for Human Genome Research, Laboratorio Internacional de Investigación sobre el Genoma Humano, Universidad Nacional Autónoma de México, Juriquilla 04510, Querétaro, Mexico

7. The Oncology Department, Ziv Medical Center, and the Azrieli Faculty of Medicine, Bar-Ilan University, Zefat 13206, Israel

8. Golan for Development, Majdal Shams 1243800, Golan Heights

9. The Meirav High Risk Clinic, Chaim Sheba Medical Center, Tel-Hashomer, Ramat Gan 52621, Israel

Abstract

Background: Druze individuals, like many genetically homogeneous and isolated populations, harbor recurring pathogenic variants (PV) in autosomal recessive (AR) disorders. Methods: Variant calling of whole-genome sequencing (WGS) of 40 Druze from the Human Genome Diversity Project (HGDP) was performed (HGDP-cohort). Additionally, we performed whole exome sequencing (WES) of 118 Druze individuals: 38 trios and 2 couples, representing geographically distinct clans (WES-cohort). Rates of validated PV were compared with rates in worldwide and Middle Eastern populations, from the gnomAD and dbSNP datasets. Results: Overall, 34 PVs were identified: 30 PVs in genes underlying AR disorders, 3 additional PVs were associated with autosomal dominant (AD) disorders, and 1 PV with X-linked-dominant inherited disorder in the WES cohort. Conclusions: The newly identified PVs associated with AR conditions should be considered for incorporation into prenatal-screening options offered to Druze individuals after an extension and validation of the results in a larger study.

Funder

Horizon 2020 - Research and Innovation Framework Programme

Israel Science Foundation, Israel Precision Medicine Partnership

The Edmond J. Safra Center for Bioinformatics at Tel Aviv University

The Koret-UC Berkeley-Tel Aviv University Initiative in Computational Biology and Bioinformatics

The QBI/UCSF-Tel Aviv University joint Initiative in Computational Biology and Drug Discovery

Collaborative clinical Bioinformatics research of the Edmond J. Safra Center for Bioinformatics and Faculty of Medicine at Tel Aviv University

Israeli Ministry of Science and Technology, Israeli–Russia; Kodesz Institute for Technologies in Healthcare

Tel Aviv University Healthy Longevity Research Center

Djerassi-Elias Institute of Oncology

Kirschman Dvora Eleonora Fund for Parkinson’s Disease

Tel Aviv University Innovation Laboratories

Publisher

MDPI AG

Subject

Genetics (clinical),Genetics

Reference34 articles.

1. Swayd, S. (1998). The Druzes: An Annotated Bibliography, ISES Publications.

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4. Identification of two mutations for ataxia telangiectasia among the Druze community;Fares;Prenat. Diagn.,2004

5. Diversity of beta-globin mutations in Israeli ethnic groups reflects recent historic events;Filon;Am. J. Hum. Genet.,1994

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