Coexisting Conditions Modifying Phenotypes of Patients with 22q11.2 Deletion Syndrome

Author:

Smyk Marta1ORCID,Geremek Maciej1ORCID,Ziemkiewicz Kamila1,Gambin Tomasz12,Kutkowska-Kaźmierczak Anna1ORCID,Kowalczyk Katarzyna1ORCID,Plaskota Izabela1,Wiśniowiecka-Kowalnik Barbara1ORCID,Bartnik-Głaska Magdalena1,Niemiec Magdalena1ORCID,Grad Dominika1,Piotrowicz Małgorzata3,Gieruszczak-Białek Dorota4,Pietrzyk Aleksandra5,Crowley T. Blaine6ORCID,Giunta Victoria6,McGinn Daniel E.67,Zackai Elaine H.67,Tran Oanh6,Emanuel Beverly S.67ORCID,McDonald-McGinn Donna M.67ORCID,Nowakowska Beata A.1

Affiliation:

1. Department of Medical Genetics, Institute of Mother and Child, 01-211 Warsaw, Poland

2. Institute of Computer Science, Warsaw University of Technology, 75, 00-662 Warsaw, Poland

3. Department of Genetics, Polish Mother’s Memorial Hospital Research Institute, 70-445 Łódź, Poland

4. Department of Medical Genetics, Children’s Memorial Health Institute, 04730 Warsaw, Poland

5. Department of Genetics and Pathology, Pomeranian Medical University, 70-204 Szczecin, Poland

6. Division of Human Genetics and 22q and You Center, the Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA

7. Perelman School of Medicine of the University of Pennsylvania, Philadelphia, PA 19104, USA

Abstract

22q11.2 deletion syndrome (22q11.2DS) is the most common genomic disorder with an extremely broad phenotypic spectrum. The aim of our study was to investigate how often the additional variants in the genome can affect clinical variation among patients with the recurrent deletion. To examine the presence of additional variants affecting the phenotype, we performed microarray in 82 prenatal and 77 postnatal cases and performed exome sequencing in 86 postnatal patients with 22q11.2DS. Within those 159 patients where array was performed, 5 pathogenic and 5 likely pathogenic CNVs were identified outside of the 22q11.2 region. This indicates that in 6.3% cases, additional CNVs most likely contribute to the clinical presentation. Additionally, exome sequencing in 86 patients revealed 3 pathogenic (3.49%) and 5 likely pathogenic (5.81%) SNVs and small CNV. These results show that the extension of diagnostics with genome-wide methods can reveal other clinically relevant changes in patients with 22q11 deletion syndrome.

Funder

National Science Centre

Publisher

MDPI AG

Subject

Genetics (clinical),Genetics

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