TERTmonitor—qPCR Detection of TERTp Mutations in Glioma

Author:

Brás João Paulo12,Jesus Tito Teles2,Prazeres Hugo12,Lima Jorge23ORCID,Soares Paula1234ORCID,Vinagre João1234ORCID

Affiliation:

1. U-Monitor Lda, 4200-135 Porto, Portugal

2. Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, 4200-135 Porto, Portugal

3. Instituto de Patologia e Imunologia Molecular, Universidade do Porto (Ipatimup), 4200-135 Porto, Portugal

4. Faculdade de Medicina, Universidade do Porto (FMUP), 4200-319 Porto, Portugal

Abstract

Telomerase promoter (TERTp) mutations are frequently observed in various types of tumours and commonly characterised by two specific hotspots located at positions −124 and −146 upstream of the start codon. They enhance TERTp activity, resulting in increased TERT expression. In central nervous system (CNS) tumours, they are integrated as biomarkers, aiding in the diagnosis and with a role in prognosis, where, in some settings, they are associated with aggressive behaviour. In this study, we evaluated the performance of TERTmonitor for TERTp genotyping in a series of 185 gliomas in comparison to the traditional method, Sanger sequencing. Against the gold-standard Sanger method, TERTmonitor performed with a 97.8% accuracy. Inaccuracy was mainly due to the over-detection of variants in negative cases (by Sanger) and the presence of variants that can modify the chemistry of the probe detection. The distribution of the mutations was comparable to other series, with the −124 being the most represented (38.92% for Sanger and TERTmonitor) and more prevalent in the higher-grade tumours, gliosarcoma (50.00%) and glioblastoma (52.6%). The non-matched cases are debatable, as we may be dealing with the reduced sensitivity of Sanger in detecting rare alleles, which strengthens the use of the TERTmonitor. With this study, we present a reliable and rapid potential tool for TERTp genotyping in gliomas.

Funder

FCT—Fundação para a Ciência e Tecnologia

Institute for Research and Innovation in Health Sciences

Norte Portugal Regional Operational Programme

Consórcio PORTO.CCC—Porto.Comprehensive Cancer Center Raquel Seruca

PRR—Plano de Recuperação e Resiliência e pelos Fundos Europeus NextGenerationEU, através do sistema de incentivos «Agendas para a Inovação Empresarial»

Publisher

MDPI AG

Subject

Genetics (clinical),Genetics

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