Multi-Convolutional Neural Network-Based Diagnostic Software for the Presumptive Determination of Non-Dermatophyte Molds

Author:

Milanović Mina1ORCID,Otašević Suzana23ORCID,Ranđelović Marina23ORCID,Grassi Andrea4ORCID,Cafarchia Claudia5ORCID,Mares Mihai6ORCID,Milosavljević Aleksandar1ORCID

Affiliation:

1. Faculty of Electronic Engineering, University of Niš, Aleksandra Medvedeva 14, 18000 Niš, Serbia

2. Department of Microbiology and Immunology, Faculty of Medicine, University of Niš, 18000 Niš, Serbia

3. Center of Microbiology and Parasitology, Public Health Institute Niš, 18000 Niš, Serbia

4. Istituto Zooprofilattico Sperimentale della Lombardia e dell’Emilia Romagna, 27100 Pavia, Italy

5. Department of Veterinary Medicine, University of Bari, Valenzano, 70010 Bari, Italy

6. Laboratory of Antimicrobial Chemotherapy, Iasi University of Life Sciences, 700490 Iasi, Romania

Abstract

Based on the literature data, the incidence of superficial and invasive non-dermatophyte mold infection (NDMI) has increased. Many of these infections are undiagnosed or misdiagnosed, thus causing inadequate treatment procedures followed by critical conditions or even mortality of the patients. Accurate diagnosis of these infections requires complex mycological analyses and operator skills, but simple, fast, and more efficient mycological tests are still required to overcome the limitations of conventional fungal diagnostic procedures. In this study, software has been developed to provide an efficient mycological diagnosis using a trained convolutional neural network (CNN) model as a core classifier. Using EfficientNet-B2 architecture and permanent slides of NDM isolated from patient’s materials (personal archive of Prof. Otašević, Department of Microbiology and Immunology, Medical Faculty, University of Niš, Serbia), a multi-CNN model has been trained and then integrated into the diagnostic tool, with a 93.73% accuracy of the main model. The Grad-CAM visualization model has been used for further validation of the pattern recognition of the model. The software, which makes the final diagnosis based on the rule of the major method, has been tested with images provided by different European laboratories, showing an almost faultless accuracy with different test images.

Publisher

MDPI AG

Subject

Electrical and Electronic Engineering,Computer Networks and Communications,Hardware and Architecture,Signal Processing,Control and Systems Engineering

Reference40 articles.

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4. Molecular Epidemiology, Phylogeny and Evolution of Dermatophytes;Cafarchia;Infect. Genet. Evol.,2013

5. Non-Culture Based Assays for the Detection of Fungal Pathogens;J. De Mycol.,2018

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