Deep Learning Algorithm for Differentiating Patients with a Healthy Liver from Patients with Liver Lesions Based on MR Images

Author:

Skwirczyński Maciej1,Tabor Zbisław2,Lasek Julia3ORCID,Schneider Zofia3,Gibała Sebastian4,Kucybała Iwona5ORCID,Urbanik Andrzej5,Obuchowicz Rafał5ORCID

Affiliation:

1. Faculty of Mathematics and Computer Science, Jagiellonian University, 30-348 Krakow, Poland

2. Faculty of Electrical Engineering, Automatics, Computer Science, and Biomedical Engineering, AGH University of Science and Technology, 30-059 Krakow, Poland

3. Faculty of Geology, Geophysics, and Environmental Protection, AGH University of Science and Technology, 30-059 Krakow, Poland

4. Ultragen Medical Center, 31-572 Krakow, Poland

5. Department of Diagnostic Imaging, Jagiellonian University Medical College, 31-501 Krakow, Poland

Abstract

The problems in diagnosing the state of a vital organ such as the liver are complex and remain unresolved. These problems are underscored by frequently published studies on this issue. At the same time, demand for imaging diagnostics, preferably using a method that can detect the disease at the earliest possible stage, is constantly increasing. In this paper, we present liver diseases in the context of diagnosis, diagnostic problems, and possible elimination. We discuss the dataset and methods and present the stages of the pipeline we developed, leading to multiclass segmentation of the liver in multiparametric MR image into lesions and normal tissue. Finally, based on the processing results, each case is classified as either a healthy liver or a liver with lesions. For the training set, the AUC ROC is 0.925 (standard error 0.013 and a p-value less than 0.001), and for the test set, the AUC ROC is 0.852 (standard error 0.039 and a p-value less than 0.001). Further refinements to the proposed pipeline are also discussed. The proposed approach could be used in the detection of focal lesions in the liver and the description of liver tumors. Practical application of the developed multi-class segmentation method represents a key step toward standardizing the medical evaluation of focal lesions in the liver.

Funder

National Center for Research and Development

Publisher

MDPI AG

Subject

Cancer Research,Oncology

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