AI-Based Detection of Oral Squamous Cell Carcinoma with Raman Histology

Author:

Weber Andreas12,Enderle-Ammour Kathrin1,Kurowski Konrad134,Metzger Marc C.5ORCID,Poxleitner Philipp567,Werner Martin13,Rothweiler René5ORCID,Beck Jürgen68ORCID,Straehle Jakob68ORCID,Schmelzeisen Rainer56,Steybe David567,Bronsert Peter134ORCID

Affiliation:

1. Institute for Surgical Pathology, Medical Center, University of Freiburg, 79106 Freiburg, Germany

2. Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany

3. Tumorbank Comprehensive Cancer Center Freiburg, Medical Center, University of Freiburg, 79106 Freiburg, Germany

4. Core Facility for Histopathology and Digital Pathology, Medical Center, University of Freiburg, 79106 Freiburg, Germany

5. Department of Oral and Maxillofacial Surgery, Medical Center, University of Freiburg, 79106 Freiburg, Germany

6. Center for Advanced Surgical Tissue Analysis (CAST), University of Freiburg, 79106 Freiburg, Germany

7. Department of Oral and Maxillofacial Surgery and Facial Plastic Surgery, University Hospital, LMU Munich, 80337 Munich, Germany

8. Department of Neurosurgery, Medical Center, University of Freiburg, 79106 Freiburg, Germany

Abstract

Stimulated Raman Histology (SRH) employs the stimulated Raman scattering (SRS) of photons at biomolecules in tissue samples to generate histological images. Subsequent pathological analysis allows for an intraoperative evaluation without the need for sectioning and staining. The objective of this study was to investigate a deep learning-based classification of oral squamous cell carcinoma (OSCC) and the sub-classification of non-malignant tissue types, as well as to compare the performances of the classifier between SRS and SRH images. Raman shifts were measured at wavenumbers k1 = 2845 cm−1 and k2 = 2930 cm−1. SRS images were transformed into SRH images resembling traditional H&E-stained frozen sections. The annotation of 6 tissue types was performed on images obtained from 80 tissue samples from eight OSCC patients. A VGG19-based convolutional neural network was then trained on 64 SRS images (and corresponding SRH images) and tested on 16. A balanced accuracy of 0.90 (0.87 for SRH images) and F1-scores of 0.91 (0.91 for SRH) for stroma, 0.98 (0.96 for SRH) for adipose tissue, 0.90 (0.87 for SRH) for squamous epithelium, 0.92 (0.76 for SRH) for muscle, 0.87 (0.90 for SRH) for glandular tissue, and 0.88 (0.87 for SRH) for tumor were achieved. The results of this study demonstrate the suitability of deep learning for the intraoperative identification of tissue types directly on SRS and SRH images.

Funder

German Federal Ministry of Education and Research

Publisher

MDPI AG

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