Genotype-Phenotype Correlations in Neurofibromatosis Type 1: A Single-Center Cohort Study

Author:

Scala MarcelloORCID,Schiavetti IreneORCID,Madia FrancescaORCID,Chelleri CristinaORCID,Piccolo GianlucaORCID,Accogli Andrea,Riva AntonellaORCID,Salpietro Vincenzo,Bocciardi RenataORCID,Morcaldi Guido,Di Duca Marco,Caroli FrancescoORCID,Verrico AntonioORCID,Milanaccio Claudia,Viglizzo Gianmaria,Traverso Monica,Baldassari SimonaORCID,Scudieri Paolo,Iacomino Michele,Piatelli Gianluca,Minetti Carlo,Striano PasqualeORCID,Garrè Maria Luisa,De Marco Patrizia,Diana Maria CristinaORCID,Capra Valeria,Pavanello MarcoORCID,Zara Federico

Abstract

Neurofibromatosis type 1 (NF1) is a proteiform genetic condition caused by pathogenic variants in NF1 and characterized by a heterogeneous phenotypic presentation. Relevant genotype–phenotype correlations have recently emerged, but only few pertinent studies are available. We retrospectively reviewed clinical, instrumental, and genetic data from a cohort of 583 individuals meeting at least 1 diagnostic National Institutes of Health (NIH) criterion for NF1. Of these, 365 subjects fulfilled ≥2 NIH criteria, including 235 pediatric patients. Genetic testing was performed through cDNA-based sequencing, Next Generation Sequencing (NGS), and Multiplex Ligation-dependent Probe Amplification (MLPA). Uni- and multivariate statistical analysis was used to investigate genotype–phenotype correlations. Among patients fulfilling ≥ 2 NIH criteria, causative single nucleotide variants (SNVs) and copy number variations (CNVs) were detected in 267/365 (73.2%) and 20/365 (5.5%) cases. Missense variants negatively correlated with neurofibromas (p = 0.005). Skeletal abnormalities were associated with whole gene deletions (p = 0.05) and frameshift variants (p = 0.006). The c.3721C>T; p.(R1241*) variant positively correlated with structural brain alterations (p = 0.031), whereas Lisch nodules (p = 0.05) and endocrinological disorders (p = 0.043) were associated with the c.6855C>A; p.(Y2285*) variant. We identified novel NF1 genotype–phenotype correlations and provided an overview of known associations, supporting their potential relevance in the implementation of patient management.

Funder

Italian Ministry of Health.

Publisher

MDPI AG

Subject

Cancer Research,Oncology

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