A survey of the genome-wide genetic variation of <i>Hibiscus hamabo</i> (Malvaceae)

Abstract

<i>Hibiscus hamabo</i> (Malvaceae) is a deciduous shrub mainly found in northeast Asia, including China, Japan, and Korea. Due to its limited distribution on Jejudo Island and at several sites in Jeollanam-do in Korea, <i>H. hamabo</i> has been designated as an endangered species by the Ministry of the Environment and has been the subject of several restoration programs. In this study, we quantified genetic variations using double-digestion restrictionassociated DNA sequencing technology in 96 individuals of <i>H. hamabo</i> from 13 distinct populations in Korea. We determined 3,352 genome-wide single nucleotide polymorphism loci after stringent filtering processes and analyzed the level of genetic variation within and among populations as well as the population differentiation and genetic ancestry with various assumptions pertaining to the population origin. Our results indicated weak differentiations among populations surveyed in this study but clearly suggested that most of the <i>H. hamabo</i> populations maintain a relatively high level of genetic diversity as evidence of frequent genetic exchanges among populations via outcrossing or sequential gene flows. For a more detailed analysis of the origin of Korean <i>H. hamabo</i> and its demographic history, it will be necessary to expand sampling in China and Japan.