Accelerating next generation sequencing data analysis: an evaluation of optimized best practices for Genome Analysis Toolkit algorithms
Author:
Funder
Lisa Dean Moseley Foundation
Publisher
Korea Genome Organization
Subject
Health Informatics,Genetics,Ecology, Evolution, Behavior and Systematics
Link
http://genominfo.org/upload/pdf/gi-2020-18-1-e10.pdf
Reference18 articles.
1. The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
2. A framework for variation discovery and genotyping using next-generation DNA sequencing data
3. The Sentieon Genomics Tools - A fast and accurate solution to variant calling from next-generation sequence data
4. Performance benchmarking of GATK3.8 and GATK4
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