Reinforcement learning‐based anatomical maps for pancreas subregion and duct segmentation

Author:

Amiri Sepideh1,Vrtovec Tomaž2,Mustafaev Tamerlan3,Deufel Christopher L.4,Thomsen Henrik S.5,Sillesen Martin Hylleholt6,Brandt Erik Gudmann Steuble5,Andersen Michael Brun57,Müller Christoph Felix5,Ibragimov Bulat12

Affiliation:

1. Department of Computer Science University of Copenhagen Copenhagen Denmark

2. Faculty of Electrical Engineering University of Ljubljana Ljubljana Slovenia

3. Swanson School of Engineering University of Pittsburgh Rochester USA

4. Department of Radiation Oncology Mayo Clinic Rochester USA

5. Department of Radiology Herlev Gentofte Hospital Copenhagen University Hospital Copenhagen Denmark

6. Department of Organ Surgery and Transplantation, and CSTAR Copenhagen University Hospital Rigshospitalet Copenhagen Denmark

7. Department of Clinical Medicine Copenhagen University Copenhagen Denmark

Abstract

AbstractBackgroundThe pancreas is a complex abdominal organ with many anatomical variations, and therefore automated pancreas segmentation from medical images is a challenging application.PurposeIn this paper, we present a framework for segmenting individual pancreatic subregions and the pancreatic duct from three‐dimensional (3D) computed tomography (CT) images.MethodsA multiagent reinforcement learning (RL) network was used to detect landmarks of the head, neck, body, and tail of the pancreas, and landmarks along the pancreatic duct in a selected target CT image. Using the landmark detection results, an atlas of pancreases was nonrigidly registered to the target image, resulting in anatomical probability maps for the pancreatic subregions and duct. The probability maps were augmented with multilabel 3D U‐Net architectures to obtain the final segmentation results.ResultsTo evaluate the performance of our proposed framework, we computed the Dice similarity coefficient (DSC) between the predicted and ground truth manual segmentations on a database of 82 CT images with manually segmented pancreatic subregions and 37 CT images with manually segmented pancreatic ducts. For the four pancreatic subregions, the mean DSC improved from 0.38, 0.44, and 0.39 with standard 3D U‐Net, Attention U‐Net, and shifted windowing (Swin) U‐Net architectures, to 0.51, 0.47, and 0.49, respectively, when utilizing the proposed RL‐based framework. For the pancreatic duct, the RL‐based framework achieved a mean DSC of 0.70, significantly outperforming the standard approaches and existing methods on different datasets.ConclusionsThe resulting accuracy of the proposed RL‐based segmentation framework demonstrates an improvement against segmentation with standard U‐Net architectures.

Funder

Novo Nordisk Fonden

Javna Agencija za Raziskovalno Dejavnost RS

Publisher

Wiley

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