Evaluating ChatGPT text mining of clinical records for companion animal obesity monitoring

Author:

Fins Ivo S.1ORCID,Davies Heather1ORCID,Farrell Sean2,Torres Jose R.3,Pinchbeck Gina1,Radford Alan D.1,Noble Peter‐John1

Affiliation:

1. Small Animal Veterinary Surveillance Network Institute of Infection Veterinary and Ecological Sciences University of Liverpool Liverpool UK

2. Department of Computer Science Durham University Durham UK

3. Institute for Animal Health and Food Safety University of Las Palmas de Gran Canaria Las Palmas, Gran Canaria Spain

Abstract

AbstractBackgroundVeterinary clinical narratives remain a largely untapped resource for addressing complex diseases. Here we compare the ability of a large language model (ChatGPT) and a previously developed regular expression (RegexT) to identify overweight body condition scores (BCS) in veterinary narratives pertaining to companion animals.MethodsBCS values were extracted from 4415 anonymised clinical narratives using either RegexT or by appending the narrative to a prompt sent to ChatGPT, prompting the model to return the BCS information. Data were manually reviewed for comparison.ResultsThe precision of RegexT was higher (100%, 95% confidence interval [CI] 94.81%–100%) than that of ChatGPT (89.3%, 95% CI 82.75%–93.64%). However, the recall of ChatGPT (100%, 95% CI 96.18%–100%) was considerably higher than that of RegexT (72.6%, 95% CI 63.92%–79.94%).LimitationsPrior anonymisation and subtle prompt engineering are needed to improve ChatGPT output.ConclusionsLarge language models create diverse opportunities and, while complex, present an intuitive interface to information. However, they require careful implementation to avoid unpredictable errors.

Funder

Dogs Trust

Petplan Charitable Trust

British Small Animal Veterinary Association

Biotechnology and Biological Sciences Research Council

Publisher

Wiley

Subject

General Veterinary,General Medicine

Reference19 articles.

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3. Small animal disease surveillance

4. BrownTB MannB RyderN SubbiahM KaplanJ DhariwalP et al.Language models are few‐shot learners [Internet]. arXiv.org. 28 May 2020. Available from:https://arxiv.org/abs/2005.14165

5. VaswaniA ShazeerN ParmarN UszkoreitJ JonesL GomezAN et al.Attention is all you need [Internet]. arXiv.org. 2017. Available from:https://arxiv.org/abs/1706.03762

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