Performance of an automated deep learning algorithm to identify hepatic steatosis within noncontrast computed tomography scans among people with and without HIV

Author:

Torgersen Jessie123ORCID,Akers Scott3,Huo Yuankai4,Terry James G.5,Carr J. Jeffrey5,Ruutiainen Alexander T.3,Skanderson Melissa67,Levin Woody67,Lim Joseph K.67,Taddei Tamar H.67,So‐Armah Kaku8,Bhattacharya Debika9,Rentsch Christopher T.6710ORCID,Shen Li2,Carr Rotonya11,Shinohara Russell T.21213,McClain Michele14,Freiberg Matthew15,Justice Amy C.6716,Lo Re Vincent12ORCID

Affiliation:

1. Department of Medicine, Penn Center for AIDS Research Perelman School of Medicine, University of Pennsylvania Philadelphia Pennsylvania USA

2. Department of Biostatistics, Epidemiology, and Informatics Center for Clinical Epidemiology and Biostatistics, Center for Real World Effectiveness and Safety of Therapeutics, Perelman School of Medicine, University of Pennsylvania Philadelphia Pennsylvania USA

3. Corporal Michael J. Crescenz VA Medical Center Philadelphia Pennsylvania USA

4. Department of Computer Science Vanderbilt University Nashville Tennessee USA

5. Department of Radiology and Radiological Sciences Vanderbilt University School of Medicine Nashville Tennessee USA

6. Department of Medicine Yale School of Medicine New Haven Connecticut USA

7. VA Connecticut Healthcare System West Haven Connecticut USA

8. Department of Medicine Boston University School of Medicine Boston Massachusetts USA

9. VA Greater Los Angeles Healthcare System and David Geffen School of Medicine at UCLA Los Angeles California USA

10. Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine London UK

11. Department of Medicine, Division of Gastroenterology University of Washington Seattle Washington USA

12. Center for Biomedical Image Computing and Analysis (CBICA), Department of Radiology, University of Pennsylvania Philadelphia Pennsylvania USA

13. Penn Statistics in Imaging and Visualization Endeavor (PennSIVE), Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania Philadelphia Pennsylvania USA

14. VA Office of Information and Technology Frederick Maryland USA

15. Department of Medicine Vanderbilt University School of Medicine Nashville Tennessee USA

16. Division of Health Policy and Management Yale School of Public Health New Haven Connecticut USA

Abstract

AbstractPurposeHepatic steatosis (fatty liver disease) affects 25% of the world's population, particularly people with HIV (PWH). Pharmacoepidemiologic studies to identify medications associated with steatosis have not been conducted because methods to evaluate liver fat within digitized images have not been developed. We determined the accuracy of a deep learning algorithm (automatic liver attenuation region‐of‐interest‐based measurement [ALARM]) to identify steatosis within clinically obtained noncontrast abdominal CT images compared to manual radiologist review and evaluated its performance by HIV status.MethodsWe performed a cross‐sectional study to evaluate the performance of ALARM within noncontrast abdominal CT images from a sample of patients with and without HIV in the US Veterans Health Administration. We evaluated the ability of ALARM to identify moderate‐to‐severe hepatic steatosis, defined by mean absolute liver attenuation <40 Hounsfield units (HU), compared to manual radiologist assessment.ResultsAmong 120 patients (51 PWH) who underwent noncontrast abdominal CT, moderate‐to‐severe hepatic steatosis was identified in 15 (12.5%) persons via ALARM and 12 (10%) by radiologist assessment. Percent agreement between ALARM and radiologist assessment of absolute liver attenuation <40 HU was 95.8%. Sensitivity, specificity, positive predictive value, and negative predictive value of ALARM were 91.7% (95%CI, 51.5%–99.8%), 96.3% (95%CI, 90.8%–99.0%), 73.3% (95%CI, 44.9%–92.2%), and 99.0% (95%CI, 94.8%–100%), respectively. No differences in performance were observed by HIV status.ConclusionsALARM demonstrated excellent accuracy for moderate‐to‐severe hepatic steatosis regardless of HIV status. Application of ALARM to radiographic repositories could facilitate real‐world studies to evaluate medications associated with steatosis and assess differences by HIV status.

Funder

National Cancer Institute

National Institute of Diabetes and Digestive and Kidney Diseases

Publisher

Wiley

Subject

Pharmacology (medical),Epidemiology

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