Integrating Bacterial ChIP‐seq and RNA‐seq Data With SnakeChunks-Reference-Cited by-同舟云学术

Integrating Bacterial ChIP‐seq and RNA‐seq Data With SnakeChunks

Published:2019-02-20 Issue:1 Volume:66 Page:
ISSN:1934-3396
Container-title:Current Protocols in Bioinformatics
language:en
Short-container-title:Current Protocols in Bioinformatics

Author:

Rioualen Claire¹²,Charbonnier‐Khamvongsa Lucie¹,Collado‐Vides Julio²³,Helden Jacques¹⁴

Affiliation:

1. Aix‐Marseille University, INSERM, Laboratory of Theory and Approaches of Genome Complexity (TAGC) Marseille France

2. Programa de Genómica Computacional, Centro de Ciencias GenómicasUniversidad Nacional Autónoma de México Cuernavaca México

3. Department of Biomedical EngineeringBoston University Boston Massachusetts

4. Institut Français de Bioinformatique (IFB), UMS 3601‐CNRSUniversité Paris‐Saclay Orsay France

Funder

National Institutes of Health

Publisher

Wiley

Subject

General Medicine

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/cpbi.72

Reference45 articles.

1. Andrews S.(2010).FastQC: A quality control tool for high throughput sequence data. Retrieved fromhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc.

2. The Complete Genome Sequence of Escherichia coli K-12

3. Coordinated response of the Desulfovibrio desulfuricans 27774 transcriptome to nitrate, nitrite and nitric oxide

4. RSAT::Plants: Motif Discovery in ChIP-Seq Peaks of Plant Genomes

5. Sequanix: a dynamic graphical interface for Snakemake workflows

Cited by 3 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Quantitative spatial analysis of bacterial transcriptome and chromosome structural data with GRATIOSA: application to twin-supercoiled domain distribution;2023-12-23

2. RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12;Nucleic Acids Research;2023-11-16

3. RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12;Microbial Genomics;2022-05-18