Machine learning techniques to characterize functional traits of plankton from image data-Reference-Cited by-同舟云学术

Machine learning techniques to characterize functional traits of plankton from image data

Published:2022-06-30 Issue:8 Volume:67 Page:1647-1669
ISSN:0024-3590
Container-title:Limnology and Oceanography
language:en
Short-container-title:Limnology & Oceanography

Author:

Orenstein Eric C.¹,Ayata Sakina‐Dorothée¹²,Maps Frédéric³⁴,Becker Érica C.⁵,Benedetti Fabio⁶,Biard Tristan⁷,de Garidel‐Thoron Thibault⁸,Ellen Jeffrey S.⁹,Ferrario Filippo³⁴¹⁰,Giering Sarah L. C.¹¹,Guy‐Haim Tamar¹²,Hoebeke Laura¹³,Iversen Morten Hvitfeldt¹⁴,Kiørboe Thomas¹⁵,Lalonde Jean‐François¹⁶,Lana Arancha¹⁷,Laviale Martin¹⁸,Lombard Fabien¹,Lorimer Tom¹⁹,Martini Séverine²⁰,Meyer Albin¹⁸,Möller Klas Ove²¹,Niehoff Barbara¹⁴,Ohman Mark D.⁹,Pradalier Cédric²²,Romagnan Jean‐Baptiste²³,Schröder Simon‐Martin²⁴,Sonnet Virginie²⁵,Sosik Heidi M.²⁶,Stemmann Lars S.¹,Stock Michiel¹³,Terbiyik‐Kurt Tuba²⁷,Valcárcel‐Pérez Nerea²⁸,Vilgrain Laure¹,Wacquet Guillaume²⁹,Waite Anya M.³⁰,Irisson Jean‐Olivier¹

Affiliation:

1. Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche Villefranche‐sur‐Mer France

2. Sorbonne Université, Laboratoire d'Océanographie et du Climat, Institut Pierre Simon Laplace (LOCEAN‐IPSL, SU/CNRS/IRD/MNHN) Paris France

3. Département de Biologie Université Laval Québec Canada

4. Takuvik Joint International Laboratory Université Laval‐CNRS (UMI 3376), Québec‐Océan, Université Laval Québec Canada

5. Universidade Federal de Santa Catarina (UFSC) Florianópolis Santa Catarina Brazil

6. ETH Zürich Institute of Biogeochemistry and Pollutant Dynamics Zürich Switzerland

7. Laboratoire d'Océanologie et de Géosciences Université du Littoral Côte d'Opale, Université de Lille, CNRS, UMR 8187 Wimereux France

8. Aix‐Marseille Université, CNRS, IRD, Coll. de France, INRAE, CEREGE Aix en Provence France

9. Scripps Institution of Oceanography, University of California San Diego La Jolla California

10. Department of Fisheries and Oceans Maurice Lamontagne Institute Mont‐Joli Québec Canada

11. Ocean Biogeosciences National Oceanography Centre Southampton UK

12. National Institute of Oceanography, Israel Oceanographic and Limnological Research Haifa Israel

13. KERMIT, Department of Data Analysis and Mathematical Modelling Ghent University Ghent Belgium

14. Alfred Wegener Institute for Polar and Marine Research Bremerhaven Germany

15. Centre for Ocean Life, DTU‐Aqua Technical University of Denmark Kongens Lyngby Denmark

16. Laboratoire de Vision et Systèmes Numériques Université Laval Québec City Québec Canada

17. Institut Mediterrani d'Estudis Avançats (IMEDEA, UIB‐CSIC) Balearic Islands Spain

18. Université de Lorraine, CNRS, LIEC Metz France

19. Eawag Dübendorf Switzerland

20. Aix Marseille University, Université de Toulon, CNRS, IRD, MIO UM Marseille France

21. Helmholtz‐Zentrum Hereon Institute of Carbon Cycle Geesthacht Germany

22. GeorgiaTech Lorraine CNRS IRL GT‐CNRS Metz France

23. IFREMER, Centre Atlantique, Laboratoire Ecologie et Modèles pour l'Halieutique (EMH) Unité HALGO, UMR DECOD Nantes France

24. Kiel University Kiel Germany

25. Graduate School of Oceanography University of Rhode Island Narragansett Rhode Island

26. Woods Hole Oceanographic Institution Woods Hole Massachusetts

27. Department of Basic Sciences Cukurova University, Faculty of Fisheries Adana Turkey

28. Centro Oceanográfico de Málaga, IEO, CSIC Fuengirola Spain

29. IFREMER, Laboratoire Environnement Ressources Boulogne‐sur‐Mer France

30. Ocean Frontier Institute, Dalhousie University Halifax Nova Scotia Canada

Funder

College of Natural Resources and Sciences, Humboldt State University

Simons Foundation

Institut Universitaire de France

Agencia Estatal de Investigación

Agence Nationale de la Recherche

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior

National Science Foundation

Gordon and Betty Moore Foundation

Eidgenössische Technische Hochschule Zürich

Publisher

Wiley

Subject

Aquatic Science,Oceanography

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/lno.12101

Reference180 articles.

1. Faking Giants: The Evolution of High Prey Clearance Rates in Jellyfishes

2. Habitat profitability in pelagic environments

3. The impact of appendicularian grazing on natural food concentrations in situ1

4. Characteristics, dynamics and significance of marine snow

5. Fish species identification using a convolutional neural network trained on synthetic data

Cited by 24 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Phytoplankton composition from sPACE: Requirements, opportunities, and challenges;Remote Sensing of Environment;2024-03

2. Tracking the frequency of phytoplankton clonal lineages using multispectral image flow cytometry and neural networks;Methods in Ecology and Evolution;2024-01-08

3. Overcoming biodiversity blindness: Secondary data in primary citizen science observations;Ecological Solutions and Evidence;2024-01

4. Harmonizing marine zooplankton trait data toward a mechanistic understanding of ecosystem functioning;Limnology and Oceanography;2023-12-22

5. DeepLOKI- a deep learning based approach to identify zooplankton taxa on high-resolution images from the optical plankton recorder LOKI;Frontiers in Marine Science;2023-11-30